RnoINT0048276 @ rn6
Intron Retention
Gene
ENSRNOG00000010905 | Dlx5
Description
distal-less homeobox 5 [Source:RGD Symbol;Acc:2506]
Coordinates
chr4:32389468-32392007:-
Coord C1 exon
chr4:32391475-32392007
Coord A exon
chr4:32389653-32391474
Coord C2 exon
chr4:32389468-32389652
Length
1822 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
AGTCTGTTTTGATTATTTAGAGA
3' ss Score
5.01
Exon sequences
Seq C1 exon
GACAGAGCCTCCACGACTCCCAGCCTCCTCCTCCCCGCCGCCGCCGCCACCGCCGCCGCCTCCTCTTCCTCCTCCTCCTCCCTCGCTCCCACAGCCATGTCTGCTTAGACCAGAGCAGCTCCACAGCCAATTCTGGCAGCAGCGGCCGCCTCAATAGGACAGCCACCGCCCGGGAGCTATGACAGGAGTGTTTGACAGAAGAGTCCCAAGCATCCGATCCGGCGACTTCCAAGCTCCGTTCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCGGAGTCCTCGGCCACCGATTCTGACTACTACAGTCCCGCGGGGGCCGCCCCTCATGGCTACTGCTCTCCTACCTCTGCTTCTTACCGCAAAGCGCTCAACCCATACCAGTACCAGTATCACAGCGTGAACGGCTCCGCAGCCGGCTACCCGGCCAAGGCTTATGCGGACTACGGCTACGCCAGCCCCTACCACCAGTACGGAGGCGCCTACAACCGAGTCCCGAGTGCCACCAGCCAGCCAG
Seq A exon
GTAGGCGTGCGGGGGCGGGAGGCAGGTACCCAAGGCATCGGTAACCCCGCGGGCCCGAAGTTGGGTAGTATATGAGGACCACGCTGTCCTCATCCATAGAAGGGGGCTTGGCAGAAGGGAATGGGGGCCTGGGACTGCTAACAAAACAGCATCTCACACAGGCACTTGCGGGGGACCGGGGGGGGGGGCGTTCAGTGGAGGAACCTCCAAGAGGTTTAATCCGGTATTTTCCCTCTGGCGCCCCTCGGGGGTCCCTCCTTAGCTGGATTCCAGGCTAGCCAAGCCAGAAAGTCAGCTTGGCTGGAAAGAGGCTAGGGATTGGGGGGAAAGAAAGAATCAGGCAGCCCCAGTGGTGTTTGTGTAATAAAAGGAAAGTTAGTTGGAATTCTGGGTGAGCATGCTGAGTTGGTGAGATCCAGTCTGGATTTGCCTGCGGAGCGCCCCGAGGCCTCGCCGGGAGGGTGCCGGCAGCACACCGGGTGGCCTGAGGGCCAGAGGGCCAGAGGGCTGCAACCTGACGGAGAGAAGCGAGCAGGGAACTTTGCGGTTTATACAAGGCATTTCCAAATACAAAAAGCCATTTAAAATAGCGGAGGGTTGTAGAGAGTTCACGTTGTTAGAGGGATTCCACCCCCCTCGCGCGCTCTCTCCATAAGAGCCTAGAATTTGTCTGCCTCCTTCTTCTCCACATCCTCCCTTTTCCTGTCCATCTTGAAACTTCCTCAGAGAATTACAGTGAGGTAGAGAACTTGGGCGCTAAATGAGAGGAGCGAAGTCTCAGGGAAGAAGTTTTACTAGTTGATTTTGATCTCCCCTCACCAACACATTAATAAGGCTGCTAATATTAGCATCCCTACTCCAGTAGAGTGGAGACCACAGCCCTCCCTCCTTCTCCACCCTTCCTTTGGCAGCAGCTTCACACAGCGACTCTTCCACTCCATCCAGGACTGAAGGGGGAAGGGGCCAGGAGGTCTAGGGGCACATTAGCAAAACACAGATTCACGGGACCCCAGCGGGGTACATTTATAACAGTGAGAATTCTTCCCAGCTGCCCTCCCCTTTAGTACGAAAAATAATCTTACTACAGATTTCTTTTCAATACATTGTTGATTGAAGTTTGAGTCTGCTCCTCTTGCTGTCTCTGTATTTGTGCATGAGGGGAGGATTTTTTTTTTTTTTTTTTGGTCAAGAACATATTAAGTCTATTTGTGAAAGAAACCAGACACATCTGTGCCCTCTCAGATCTGCAGTGAGATTATGGGGACTACATAATCGGCTCTCTGTCTGCCGAAGCCCCGACCGACCTCTTGCCGCTGTAGTGAAGGAACATAGTTTGCTTGTCGGTCTTTGAACTCTGGAGACCTTGGCTAGCGTCTTCCCTGCCCAAGCGTCTAGCCTCTGCGGGCTACCCAACAGACGCCGACAGAAGCGGGGTCATGGCCCAGGGGCCTCCTCGCTTGACACCCTGGGAGTGGAGTGGCTACTCGCGTCCCAGAAACGCACAAGGTGAATACAGGAAGGGAAAAAGTAATGAGAGAAGCAAGCAGCTCAAACGAGTTCCATCCCTAAAGCGACGAACCTGATGTGTCCTATGTGTCCCACGCTCTCAGTGGCTATTAAACGGAGACTCGCCAACTCCTCTATGTAGGATTTGAGGAAAGGACAGATTTCACTGGGGTTTGAAAAGCCAAGGTTGTGATATTGGGGAAGAGAAAGATGACTACATATTTCAAAACAAAGAAAACCTCGGTGATCTGAGTGCCTATGCAAAAGAGCCATTGTCTGCTCGGAAGCGCTAACCTAGTCTGTTTTGATTATTTAG
Seq C2 exon
AGAAAGAAGTGGCCGAGCCAGAGGTGAGGATGGTGAATGGTAAACCAAAGAAAGTTCGTAAACCCAGGACTATTTATTCCAGCTTTCAGCTGGCCGCTTTACAGAGAAGGTTTCAGAAGACTCAGTACCTCGCCCTGCCAGAACGCGCGGAGTTGGCCGCCTCTCTAGGACTGACGCAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010905:ENSRNOT00000014946:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=73.1)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACCTCTGCTTCTTACCGC
R:
TTGCGTCAGTCCTAGAGAGGC
Band lengths:
354-2176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]