BtaINT0049788 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018645 | DLX5
Description
Bos taurus distal-less homeobox 5 (DLX5), mRNA. [Source:RefSeq mRNA;Acc:NM_001075313]
Coordinates
chr4:14293630-14296237:-
Coord C1 exon
chr4:14295725-14296237
Coord A exon
chr4:14293815-14295724
Coord C2 exon
chr4:14293630-14293814
Length
1910 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
GGTCTGTTTTGATTATTTAGAGA
3' ss Score
5.23
Exon sequences
Seq C1 exon
CGGAGACAGAGCCTCCGCGACTCCCAGCCTCCTCCTCGCCGCCGCCGCCGCCGCCTCTCCTCCTCCTCCTCTTCCTCCTCCTCCCTCGCTCCTACAGCCATGTCAGCTTAGACCAGAGCAGCCCCACAGCCAATTCGGGCCGCCGCCGCCAGCGAGCGATGACAGGAGTGTTTGACAGAAGGGTCCCCAGCATCCGATCCGGCGACTTCCAAGCCCCGTTCCAGACGGCCGCAGCTATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCTTCGGCTACCGATTCCGACTACTACAGCGCCCCGGGGGGAGCCCCGCACGGCTACTGCTCTCCTACCTCGGCTTCCTATGGCAAGGCGCTCAACCCTTACCAGTACCAGTACCACGGCGTGAACGGCTCCGCCGGCAGCTATCCCGCCAAAGCTTACGCCGACTACAGCTACGCCAGCCCCTACCACCAGTACGGCGGCGCCTACAACCGCGTTCCGAGCGCCACCAGCCAGCCAG
Seq A exon
GTACCGGGAGTGGGGGTGGGAGTCAGGATTCGTGGAGAGGGAGATGCGGTAGGACATGGGGGAGCCGCGCCATCCACTGCAATGGGGGAGCACTCGGCGGAAGGGAGTGGGGGCCGGGTTTACAAACCAGAGAGATTCCCGGGCCAGCATTTTAGAGATTCTTAGCAGAAGCAGCCTGCGGGGGGTGTTCGGACCAGCGTCTCTCCTCTTCGGTCCCTTCAGGCGACCGCTCAGTCGCTGGATTCTCAGCTTGCCCGGTCAGGAAGCCAGCTAAACTGGAAAGGGGGTAGGGAGAAGGCTATTTGTTGGATTTGGGCTGGGGGGTAGGCGAGCTCGGTCGGTGGGAATCGGGATGCACGGCTGCCTCAAAGACTCCGTGGGGAACAGTATGGGAGCAGCTGCGAGCCAGCGTGGTATGGGTGCCCGGAGCACACGGGGCAGGGTGGGGGCCCGCGAGCCCTAGCCCGCCAGAGGAAGAGCGCGCCGAGAGCCTTGCGGTTTATCCAAGGCATTTCCAAAAACAAAAAGCCATTTAAAGGTGGAGGAGGTTTGCTGAAGGGTCACGTTATTGGAGCAATATTTTTTTTTCTCCATTGGGTGCCTAAAATTTGTTTCTCCTTCCCATCTCCTTTTTCATATGCCTTGAAACTTAGTTGGAGAGTTTGAGGGTTATTGAGTTTGGGCGGTAAGAGAGGTATGAGGTCTCCTTGGAGAGGTTTTGCTGGTCAGGTTTGATCTCTTCCCACCAGCACATTAATAATCCTGCTAATATTAGCATCCCCTGCTCTGGCAGAATGGAGACCACAGTCCTCGTCCTCCACCCTTCCTCTCCCAGGAGCTCGGCGCGCGCGCACACACACACACGCACACACACACACACACACACACGCACACCGCAAGGAGAGGGTCTCCGCCCCTTTCAGAGATGGGCACTTTTGATAAGAAGGTACTTTTGTGAAAGGGGACTTGTGGCCCCAGGGCACGTTTGGAAAACACGCGTTCGGAGAGTCTCCGCTCCCCGCCCCCCGCCCCCCGGTCTATACTACCAAGTCTGCTAAATTCGTCCTGATCTGGCGCCCCTTTACTACGAAAACACCCCACCGCAGATTCTTTTTCAAATTGTAACTCTTGATAAACTTTAAAAGATTGCCGGGGTGGGTGGGTGGGTGGATGGGGGCAGGGGGAGGAGAAGTGGGGTGTCTTCGTTCCTTTCAGTGGCTCAGTGCTTCGTGCATACATGAAAGATTTTTTTTTCCCTTTTGGCCAAGAACTTATTAAGTCTATTTGTAAAAGAAACCAGACACATCTGTGCCCTCGCAGATCTGCAGGGAGATTATGGGGGCTGCATAATCGACCCTCTGTCTGCGGCGGCTCGGACCGCTTGCCTCTGAATGGAAGGAGCAGTTTGCTTGTGGGTCTTTGAACTTTGGAGACCTCGGTTAGCGTCTTCCCTGCCCATGCGTCCGGCCTCTGCGGCCGCCCGAACAGACACTGACATAAGGGGGACCACAGCCCGGGCTTCCTCGCTTGAATCCCCGAGAGAGACGGGTCCAGAACTCACCCCAGAGCCGTCGGTGAACACAGGGTGGGACTGAAAACGAATCCGGGTGAAGCAAGAACCTCTGCAAGGGCTAAATCCCGGACGCCGAGAAGGGAGTTCTGCTGTACCAGACGCTCTGCAAAAACCCAGGAGAACCTGACTAAACAGAGAAGGAAATTAATCAGGCTACCTGGCCTTTTCCATGATGAGGGGCCGGGGGGGTGGGGGTGTCCCGTGAAGTAAAGGTGGTGATATGGGGAAAAGAGAGTGAAGGCTGCGTGGTAAGAATTTCAAGGACTGTATTCGCAAGTTCTGCAAAAGGGCCATTGTCTGCCAACGAGTTCTAACCGGGTCTGTTTTGATTATTTAG
Seq C2 exon
AGAAAGAAGTGGCCGAGCCCGAGGTGAGGATGGTGAACGGCAAACCAAAGAAAGTTCGTAAACCCAGGACTATTTATTCCAGCTTTCAGCTGGCCGCGTTACAGAGAAGGTTTCAGAAGACTCAGTACCTCGCCCTGCCCGAACGCGCCGAGCTAGCCGCCTCGCTGGGACTGACGCAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018645:ENSBTAT00000024811:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.395 A=NA C2=0.306
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=73.1)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTCGGCTTCCTATGGCAA
R:
CTGTGTTTGCGTCAGTCCCAG
Band lengths:
358-2268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]