MmuINT1008670 @ mm10
Intron Retention
Gene
ENSMUSG00000029755 | Dlx5
Description
distal-less homeobox 5 [Source:MGI Symbol;Acc:MGI:101926]
Coordinates
chr6:6879526-6882085:-
Coord C1 exon
chr6:6881532-6882085
Coord A exon
chr6:6879711-6881531
Coord C2 exon
chr6:6879526-6879710
Length
1821 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
AGTCTGTTTTGGTTATTTAGAGA
3' ss Score
4.4
Exon sequences
Seq C1 exon
AGCAGTCAGCCTGCGGGAGACAGAGCCTCCACGACTCCCAGCCTCCTCCTCCTCCTCCTCCCCGCCGCCGCCGCCGCCTCCTCCTCTTCCTCCTCCTCCCTCGCTCCCACAGCCATGTCTGCTTAGACCAGAGCAGCTCCACAGCCAATTCAGGCAGCAGCGGCCGCCGCAGTAGAAGAACAGCCACCGCCCGGGAGCTATGACAGGAGTGTTTGACAGAAGAGTCCCAAGCATCCGATCCGGCGACTTCCAAGCTCCGTTCCCGACGTCCGCCGCCATGCACCACCCGTCTCAGGAATCGCCAACTTTGCCCGAGTCCTCGGCCACCGATTCTGACTACTACAGTCCCGCGGGGGCCGCCCCGCACGGCTACTGCTCTCCTACCTCTGCTTCTTATGGCAAAGCGCTCAACCCCTACCAGTACCAGTACCACGGCGTGAACGGCTCCGCAGCCGGCTACCCGGCCAAGGCTTATGCCGACTACGGCTACGCCAGCCCCTACCACCAGTACGGCGGCGCCTACAACCGCGTCCCGAGTGCCACCAGCCAGCCAG
Seq A exon
GTAGGCGCGCGGGGGCGGGAGGCAGGTACCCAGGGCATCCGTAACCCCGCGGGCGCCAAGTTGGGTGGTAGATGAGGGCCACGCTGTCCGCACCCATAGAAGGGTGCTTCGCAGAAGCGAGTGGGGGCCTGGGACTGCAAACAGGACAGCACCTCACACCGGCATGGGGGGGGGGGCAGTGGAGGACTTTTGAAGAGGTTTAATCGGGTGTTTTGCCTCTGGCGCTGCTCGAGGATCCCTCCTTAGCTGGATTCCTAGCTGGCCTAGCCAGAAAGCCAGCTTGGCTGCAAAGAGGCTAAGGGATTTGGGGGGCGGGGGGTGGGTGAAATCAAGCAGCCCTAGTGGTGTTTGCGTAATAAAAGGAAAGTTAGTTGGAATTCTGGGTGAGCGTGCTGAGTTGGTGAGATCTAGTCTGGATTAGCCAGCGAAGCGCCCCGAGGCCTCTCATGGAGGGTGCGGGCAGCACACCGGGTGACCTGGGGGCCGGAGGGCTGCAGCCTGACAGAAAAGCGAACAGGGAACTTTGCGGTTTATCCAAGGTATTTCCAAATACAAAAAGTCATTTAAAATAGCGGAGGATTGCCGAGAGTTCACTCTGTTAGAGGGACCCCCCCCCACACACACACACACACTCCATCGAGTGCTCTCTCCGTAAGTGCCTAGAATTTGTCTGCCTTCCTTCTTCCCCACAGACTCCCCTTTCCGTCCACTGTGAAACTTCCTTAGAGCGTTACAGTGGGGTAGAGAGCTTGGGCGGTAAATGAGAGGCGTGAAGTCTCAGTGGAGAAATTTTACTAGTCGATTTTGATCTCCCCTCACCGACACATTAATAAGGCTGCTAATATTAGCATCCCCTACTCCAGTAGAGCGGAGACCGCAGCCCTCCCTCCTTCTCCACCCTTCCTCTGGCAGCAGCTTCATACACCGACTCTTCCACTCCTTTCAGGACTGAAGGGGGAAAAGGGGCCATGTGGCCTAGGGGCACATTAGCAAAACACGGATTCACAGGACCCCAGCGGGGTACATTTATGACAGTGAGAATTCTTCCTTGGTTCCTCCCCTTTACTACGAAAATATCCTTACTACAGATTCCTTTGCAATACATTGTTGATGGAAGTTTGAGTCTGCTCCTCTTGCTGTCTCTGTATCCTTGCATAGGGAGAGGATTTTTTTTTTTTTTTTTTTTGGTCAAGAACATATTAAGTCTATTTGTGAAAGAAACCAGACACATCTGTGCCCTCTCAGATCTGCAGTGAGATTATGGGGACTACATAATCGGCTCTCTGTCTGCCGCAGCCCCGACCGACCGCTTGCCGCTGTAGTGAAGGAACATAGTTTGCTTGTCGGTCTTTGAACTTTGGAGCCCTTGGCTAGCGTCTTCCCTGCCCAAGCGTCTAGCCTCTGCGGGCGCCCGAACAGACGCCGACAGAGGGTCATGGCCCAGGGGCCTCCTCGCGTGACGCCCAGGGATTGGAGTGGCTATTCGCGTCCCAGAAACACACAAGGTGAATACAGGGAGGGAAAAAATAATGAGAAAAATAAGCATCTCCAAAGGGTTCCATCCCTAAAGCGAAGAACTTGATGTGTACAAAGTGCCCCACGCACACAGTGGCTAGTAGTCAGAGACTCGCCAGCTCTTCCATGTATGATCTGAGGATGGGACAGATTTCTCTGGGGTTTGAAAAGCCAAGATTGTGATATTGGGAAAGAGAAAGATGACTACATATTTCAAAACAAACAAAATCTCGCTGATTTGAGGGCCTGTGCAAACGAGCCATTGTCTGCCAGGAAGCTCTAACCTAGTCTGTTTTGGTTATTTAG
Seq C2 exon
AGAAAGAAGTGGCGGAGCCAGAGGTGAGGATGGTGAATGGTAAACCAAAGAAAGTTCGTAAACCCAGGACTATTTATTCCAGCTTTCAGCTGGCCGCTTTACAGAGAAGGTTTCAGAAGACTCAGTACCTCGCCCTGCCAGAACGCGCGGAGTTGGCCGCCTCTCTAGGACTGACGCAAACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029755:ENSMUST00000052609:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.338 A=NA C2=0.266
Domain overlap (PFAM):
C1:
PF124133=DLL_N=WD(100=73.1)
A:
NA
C2:
PF0004624=Homeobox=PU(73.7=67.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTTCTTATGGCAAAGCGC
R:
TTGCGTCAGTCCTAGAGAGGC
Band lengths:
347-2168
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types