BtaINT0049888 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013347 | DMPK
Description
dystrophia myotonica-protein kinase [Source:HGNC Symbol;Acc:HGNC:2933]
Coordinates
chr18:53761962-53762972:-
Coord C1 exon
chr18:53762864-53762972
Coord A exon
chr18:53762120-53762863
Coord C2 exon
chr18:53761962-53762119
Length
744 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
AGCCTCGTTTCCATACCCAGGCT
3' ss Score
5.57
Exon sequences
Seq C1 exon
GGATGATGAGATCCTAGGCTCCACGCCCATGGAACTGGAGGCCGAGCCATTGCCTGAGCCATTGCAAGAGCCCAGCCTGGAACCCACAGTGCCCCCACTAGAGGAAACG
Seq A exon
GTGAGTCCCTGGAGGAGAGTCAGTGAGGGATGAGAAGGGAAGGCCTTTGGGGATACCGTGTGCCGTGGAATGCTGGACCTCCTGGGAACTTCCTCAATAGAAAGGGGTGGAAGACCAAGTGGAGACAAGGCTACTTTGGTCAGACGTGACCCTCACAAAGAAATTAGAACAGGTCACTGAGTTCTAATTTCTAATGCATGGAGGGGGACTCTCAAGGGAGGGGAAGCCCCGGAGAAGGAGGAAAAGCAAAGAGAACCTTAAGAGTAAGGGCTCTGAGGTGGGAACCAGCTGATTTTGCTCTTAAATGTGAAAGGAGTGTAGCAAGGCTGCACTGTTCCAGGAGAAAGGACAGTGAAGAATGAGGAGTGGGGTGGCTGAGGCCAGCCCAGGCACACCAGACAGGGCCTTTCAGTGTGGTGTGCCTCCTCCTGAGGGCTCTGAGGGGCTGGAGACAATCTGAGCAGAGGAGGGACCTGGTCAAGTTGGGCAGTGTTGTAGGAACAGACCTTTGGTTTTGGTGTGGATGGGAGGAGACCAGAGTAAAGGCTGGAGATGAGTAGGACTGGGCTGGCATTACCCCTCCAAAGAAGGGAGTCTGGATCACTGTGGAGCTGTGGAGATTCCAGAAGGATCTAGGGGGTGCAGGAATAGAGGTCAAGGGAGGACCCCAGTCCTGCAATCTATGCTCAAGCCTTGAATGCTCCCCAGGCCTCAGGCCACCCTAAGCCTCGTTTCCATACCCAG
Seq C2 exon
GCTGAAGCGGCAGTTCCGGAGACCATTCCGGAGGCGGTGGCAGAGCCGGAGGTGACGCTGCGGGAGCTCCAGGAGGCCCTGGAGGAGGAGGTGCTGACCCGGCAGAGCCTGAGCCAGGAGCTAGCGGCCATCCATAAGGCCAACCAGAACTTCGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013347:ENSBTAT00000017759:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.865 A=NA C2=0.830
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF139491=ALIX_LYPXL_bnd=PU(46.7=94.3),PF060097=Laminin_II=PU(58.3=92.5),PF032458=Phage_lysis=PU(46.1=77.4),PF088265=DMPK_coil=PU(50.8=58.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGATCCTAGGCTCCACGC
R:
CTGGCGAAGTTCTGGTTGGC
Band lengths:
262-1006
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development