MmuINT0050317 @ mm10
Intron Retention
Gene
ENSMUSG00000030409 | Dmpk
Description
dystrophia myotonica-protein kinase [Source:MGI Symbol;Acc:MGI:94906]
Coordinates
chr7:19090929-19091844:+
Coord C1 exon
chr7:19090929-19091040
Coord A exon
chr7:19091041-19091680
Coord C2 exon
chr7:19091681-19091844
Length
640 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
ACTCTGATCCCCACCGACAGGCT
3' ss Score
6.6
Exon sequences
Seq C1 exon
AGACAATCAGGTCCCGGACCCCACCCCTATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTTGACTTGCAGCCCCCAGTGTCCCCACCGGATCAAGTG
Seq A exon
GTGAGTAGACTGAGAGGTGGGCAAAGCTTCCTGGGTGGGTGTACCTGCAGTGCCAACTGCCAGGCTGTTAATTCAGTAGGACACTGTCCCCAACTGGCCCAACTGCACATCCTGTAGTCAGGAGGCACAGGCAGAAAAATCCCAAATTCAAGGCTTGCTCCCGTTATGTAATGAGATCCTGTCTTGGAGTAAAAAACAAAGAAGAGAACTAGGGATAGCTCAGAGGTAGATGCTCTCCTGGCATGGGGGTGGGGTCAGAAAGCAACACCAACCGGGGCCTGGGAGGGAGGGACTGCCAACCACCTGGAGGAGTCTGGGGTAGACTTGGTGAACAAAGTTCAGAGGCCATCAGGTGGGATGCTGGTTTCTTAAAAGCCACAGATAGGTGGGTAGCATTGGAAAGAGGAGTGGGGGGTTGCAGAAAGTGACAAGACACAAACTGGGGAGGCCTAAGGGTAAAGCCAGGGTTGTCTGAAGCACTGTGGAGCTGGGAGGAACACGCTAAACTTCTGACTTCAGCCCTTCAGTTCCCCTGTTGACTACACTGTCCCCAGGGACCCAGGGATGGGGAGAGGTGGACGGGGGAGGGAAGTACGGGACTGATCCAGCTCCAGGTCCCAACTCTGATCCCCACCGACAG
Seq C2 exon
GCTGAAGAGGCTGACCTAGTGGCTGTCCCTGCCCCTGTGGCTGAGGCAGAGACCACGGTAACGCTGCAGCAGCTCCAGGAAGCCCTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGGACCGCCAACCAGAACTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030409:ENSMUST00000032568:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=NA C2=0.745
Domain overlap (PFAM):
C1:
PF041569=IncA=PU(26.2=84.2)
A:
NA
C2:
PF041569=IncA=FE(44.3=100),PF088265=DMPK_coil=PU(50.8=56.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAATCAGGTCCCGGAC
R:
GAGAAGTTCTGGTTGGCGGTC
Band lengths:
273-913
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types