RnoINT0048359 @ rn6
Intron Retention
Gene
ENSRNOG00000015085 | Dmpk
Description
DM1 protein kinase [Source:RGD Symbol;Acc:1309825]
Coordinates
chr1:79996436-79997373:+
Coord C1 exon
chr1:79996436-79996547
Coord A exon
chr1:79996548-79997209
Coord C2 exon
chr1:79997210-79997373
Length
662 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGT
5' ss Score
10.49
3' ss Seq
ACTCTGATCCCCACCGACAGGCT
3' ss Score
6.6
Exon sequences
Seq C1 exon
AGACAATCAGGTCACGGACCCCACCCCTATGGAACTAGAGGCCCTGCAGTTGCCTGTGTCAGACTTGCAAGGGCTTGACTTGCCGCCCCCCGTGTCCCCACCGGATCAAGCG
Seq A exon
GTGAGTAGACTGAGAGGTGGGCAAAGCTTCCTGGGTGGGTGTACCTGCAGTGCTAACAGTGAGGCTGTTGATTCAGTAAGGGACTGTCCCCAGCTGGCTCAGCAGCACATCCTGTAACCTTAGCTACTCAGGAGGCACAGGCAGAAGGATCCCAAATTCAAGGCTTGCTCGAGTTATGTAATGAGACCCTGTCTTGGAATAAAAAACAAAGAAAACTAGGGATAGCTCAGAGATAGATGCTTTCCTGGCATGGGGGTGGGGTCAGAAAGCAACACCAACCGGGCCTGGGAGGGAGGGGCTGCCAACCACTGAGTCTGAGGTAGAGGTTCTTATGGTCAGTTGGTAAACAAGTTCAGAGGCCCTCAGGTGGGATGCTGGTTTCTTAAAAGCTATAGGAAGGTCGGTGGCATTGGAAGGAGGGGTGTTGCAGATAACGACAAGACACAAACTGGGGAGGCCTATGGGTAAAGTCAGGGTTGTCTGAAGCACTGTGGAGCTCGGAGAGACATGCTAAACTTCTGACTCCAGCCCTCCTGTTCCTGGGTGACTAGACTGTCTGTCCCCAGAGACCCAGGGCTGGGAATAGGGGTGGGAGGAATGGAGGTGGAGGGAAGTGCTGGACTGATATAGTCCCATGTCCCAACTCTGATCCCCACCGACAG
Seq C2 exon
GCTGAAGAGGCTGACCCCGCGGCTGTCCCTGTCCCTCCGGCTGAGACAGAGACCATGGTGACGCTGCGGGAGCTCCAGGAAGCCTTGGAAGAAGAGGTTCTCACCCGGCAGAGCCTGAGCCGCGAGCTGGAGGCCATCCGTACCGCTAACCAGAACTTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015085:ENSRNOT00000020428:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=NA C2=0.982
Domain overlap (PFAM):
C1:
PF104814=CENP-F_N=PU(6.2=13.2)
A:
NA
C2:
PF104814=CENP-F_N=FE(67.5=100),PF088265=DMPK_coil=PU(50.8=56.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACGGACCCCACCCCTATG
R:
TGGAGAAGTTCTGGTTAGCGG
Band lengths:
263-925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]