BtaINT0050094 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49080701-49082613:-
Coord C1 exon
chr22:49082401-49082613
Coord A exon
chr22:49080866-49082400
Coord C2 exon
chr22:49080701-49080865
Length
1535 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
ACAGTCCACGCCCTGTCCAGGAG
3' ss Score
5.12
Exon sequences
Seq C1 exon
GCTCTGGACAAGATGGAGAAGGAGTGGTCCACCATTCTGTTCAACGTGATGCCCTACAAAGAGACAGACACCTACATCCTCAAGAGCCCAGATGAGGCCTCCCAGCTGCTCGATGACCACATCGTCATGACCCAGAGCATGTCCTTCTCACCCTACAAGAAGCCCTTTGAGCAACGCATCAACTCCTGGGAGACCAAGCTGAAGCTGACGCAG
Seq A exon
GTGGGCCTTCCTGCCCTCTCCTCCCCCACCCTGCCCAGTGCCCTGTCCCAAGGTGGCTCCTGATGATGTTCGGGTGGGGCTGGACGCGGTGAAGTGCCTTGCCCAGGTTTGTCCGGCTCCTGGCTCTCTGACAGGCCCCTCAGTCAGAGGAGGTGGACTAGAATGGGGCTCTCCATCTCTGATGTTGGGCTGCTGGAGTTGGCAGTTCAGGGCTTAGAGGTGGGGCCAGAGTTTGGGCCAAAGCTGCCCTTAAAGAGGAGCACAAGAGCTGCCCCCAGACCCCTGAGTGCTGCCTGGGCTTGGGGCAGCTGGGACCTCCAGGCTTGGGGCTTTCTGGGCTGGACACCACGAGGCCTGAGGCTCCTCAGTGTCTCTTCCCACTATTCCCTGAGCCTCCCACTCCCACTCCTGTCTTACTTGGAGCCGCCTTTGGGGGAGGGCACCAGGGCACTGGGGATCACTGTTCTTTAGGGCTCTCGAGGCAAGTGGCTGGGGCTGTCTTCAGAGCCCTGAGGTCAGTCCAGGGCAGGCCTACTAGTGTGATCCCAGCAACTCCTTCTAGAGGGCTTCCTGGTAGCTATTCAAAGACCTCCAGTGAAGGCCAGAAGCTGAAAGAGGAAGACCTGCCTGTGTTCCTTGGGTCACCCAGAGAGGCCTGAGGTCATCAGCATTGTCCCTGGGTCTCCATCCTTTGCTGTCCTCTCTCCCTGGAGTCCCATTTCCTCCAGGGATCAGCATCAAGCAGCCCTCACCGACTCCCCCACCACTCCCCGCCTGCAGGGTGTTCCCATTGAGGCTTCTGGTCGATGCCCCTTACAGAGCCCATCACACGTGCTGGGGCCCTCAGTGATTCAGAGGCATAAGTGGCTGTTCAGAGGGTGGTGGGCTCCTCGAAGGCAGGGACCACCCTCTCCTCTGTTTCCTCTGGAGCCCACATGGGCCTGACCTGGGCCTGACACAGCTCACAGCTTGTGAAGAAGAGAATGAACTCATGAATGAATGAATGCGTTTGCACTGATAGGGAAAGGCAAGAGACAAATTCGGAAAGGGGATTGTGGAGGCAAGAGGGGACGGTGACTTGAAGAGGGCTCACTTGTGGACTGATGTTTTAGAGAGTATTTTAGGGGATCTCAAGCTCAAGTCCAAGTACACCGCCAAGAATCCTGGGGTCATAGACCCAGAGTCCTCCCAGGAGAGGAGACTAGTTTGGGCTTCCATGCACTGAGCTCTGTATTGTTTCCTCGTGGTGTGCTGCTTGGGGTGTGGTTCTCTCATAGGAAGAGTAGCTCCCCTGGCTCTGTTGGAGGCCTGGACATCCTATGGGGGACTTGGGGTTTCTCTGGAAGGCAGGCATCCATGCAGCCCTCTTTGTTGCCTGGAGTCCTGTGACTGACAGCGCCACCTAGAAATTTCCCCATGGGCACAGGCTCTGGCCCCCAGTGCTCTGCCCAGAACTCAGTGGGGTAAAATGCCTGGGTCACGGGGGCCAGGACCCAACTTGGGCCGCAGGCCCTGACAGTCCACGCCCTGTCCAG
Seq C2 exon
GAGGTGCTGGAGGAGTGGCTGAACTGTCAGCGGGCTTGGCTCTACCTGGAGCCCATCTTCAGCTCCGAGGACATCAACCGGCAGCTGCCGGTGGAGAGCAAGCGCTACCAGACCATGGAGCGGATCTGGAGGAAGATCATGAAGAATGCCTACGAGAACCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGAAGGAGTGGTCCACC
R:
CATGATCTTCCTCCAGATCCGC
Band lengths:
342-1877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]