GgaINT0019465 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2883698-2885236:+
Coord C1 exon
chr12:2883698-2883910
Coord A exon
chr12:2883911-2885071
Coord C2 exon
chr12:2885072-2885236
Length
1161 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTA
5' ss Score
7.64
3' ss Seq
TGTCCTATCTTTCCCACTAGGAT
3' ss Score
12.42
Exon sequences
Seq C1 exon
GCACTCAACAAGATGGAGAGTGAATGGAGCTCTGTTTCTTTTACTGTTTCGCTTTACAAAGACACGGGTACCTTCATTCTGAAAGACACTGATGAAGCTTCTCAGCTCCTAGATGATCATATTGTCATGACTCAGAGCATGTCCTTCTCACCGTTCAAGAAACACTTTGAGGACAGAATGAACACATGGGAAAACAAGCTGAGGATGACTCAG
Seq A exon
GTACTAGTGTCTTAGTTACATATATCTGAAGGCCAGCATCTAGCCTGTGCTGCCATGCCTTAACATGGACACTGTGGGTGGGTACACAACTGTCAAGAGGATAATTTCTTGGGAGGAAGAAGCCTGGTTAAATCTGTCTGGTTCTAATAAATAAGACAAACTCGGTGCCTTATTCTGCAAACAGAAGTGATGAAATTTCGGCCCTTTTGCTACCTTTGACAATGCTTTTTGGTGGCATCTCTAATAACGTTACACCAAGTGGACCTTACAGCTTCTTTACAGGCCCTGTGCTAATCACGTCAAACTAAAGCCTGAGTGCTGTCCACACAAAAGCATTCACATATCAGAGTAGGATAACACACTTCTGTGTCAGACCTGAGCCTGAATGTGCAGGACACAGCAGGACTCTACCAGCAGAACAGCATTTTGTTGCAGGGGAAAAAATTCTGTACAACTGTTTTGCTGGAGAACTCTGTTTGATTTACAGCAGCATTGTTACCTGTTATTCATCATTGCCTGTTTATTGGTGCTTACCATCTGGGTGTGCTTGGGCCATAGGCTGCTAGAGAGCTGATCTTGCCTCATAAGGCTACAGCAATGCTACTGTAAGCCCTAAGGCGGAAGGTGACATGGGGAAATGCAGTTATTTACTGTGTGGTTTTGACTGTGACATTTTGTTTTCACCCTGCCTTTCCTACTTCTTTAGATTGCATTCATTCCTGTCTGTAAAGGCCCATGAATCCTCTCCTGGGAAGTGGCTTAGCAGGGTTAGCTGATGGATGGGTATGATGGGGTATGGCAAACACAGCTGTCTGCATTATGAGGAAACCTCACTTCTTGCTAGGTCAAGTGAGTGCATGTCTGCAGGGAATGGTAGAAGACTGCTTCCTGTAACCAAGGCTGGTTTCCTCTGGCAGGCAGAAAGGCAGTCCAACACTGCTGTGTAGTGTTGGGTAGGCTCCCCATACCTTCCAGTCTTCCATTCCTGAAAATGGAGGAAGAGGGTGTTCTTCCCATCTAATTCTTGCTCCTGCAAATGCATGTCAAACAGGGTTGACTCTGTGATGTCTAATTTAATGGATTGGCTTTTCATTCATTCTCTTAATTCGGAGAAGATTGTTTGAAGATCTACGTGGAGTGGTGTCCTATCTTTCCCACTAG
Seq C2 exon
GATGTCCTAGAGGAATGGTTGAACTGCCAGTGCTCTTGGCTCTACCTGGAGCCCATCTTTAGGTCAGAAGACATCAAAAGGCAGCTGCCAGTGGAAAGTGAGCGCTTTCAGGTGGTGGATACAGACTGGAGGATCATCATGAAGAACGCTAACGAAAATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGAGTGAATGGAGCTCTGT
R:
GCGTTCTTCATGATGATCCTCCA
Band lengths:
349-1510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]