DreINT0057969 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34440504-34441075:-
Coord C1 exon
chr11:34440863-34441075
Coord A exon
chr11:34440669-34440862
Coord C2 exon
chr11:34440504-34440668
Length
194 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
CTGTGGCCCTCTGGTGGTAGGAA
3' ss Score
5.99
Exon sequences
Seq C1 exon
GCTCTGAACAAGATGGAGGAAGAATGGTCAACAGTGATGTTTGAGGTGATGCCGTATAAAGAGACAGGAACTTACATACTGAAGAGCCCAGATGAAGCATCTCAGCTCCTAGATGACCACATCGTCATGACCCAGAGCATGGCCTTCTCTCCATATAAAAAACCCTTTGAGGAGAGAATCAGCAAGTGGGAAAGTAAACTGAAAATGACACAG
Seq A exon
GTAAGCCAAAAGTAATTCTGCAAATATGATTCTGAAATCTGCATGGTGAAATATTGTTGGGTGGCCTAATAAATTAGCATGTTTCTGCAGAAATAGAAAACCAAAATCTTCATGAAAATGTTTGATTAGTATCTCCTCCCCCCTCCCCCTCTCCCCTCCAAAAAAACATTGTTACTGTGGCCCTCTGGTGGTAG
Seq C2 exon
GAAGTATTAGAAGAGTGGCTCATCTGTCAGCGGTCGTGGCTGTACATGGAACCCATTTTCAGCTCTGATGACATCAACCGCCAGCTGCCGGTGGAAGGAAAGAGGTATCAAACCATGGAGCGCACCTGGAGGAATATCATGAAGGCCGCCCATGATAACAATCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.3=100)
A:
NA
C2:
PF083938=DHC_N2=FE(13.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCGTCATGACCCAGAGC
R:
TTGTTATCATGGGCGGCCTTC
Band lengths:
257-451
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]