RnoINT0048574 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7381469-7382947:-
Coord C1 exon
chr16:7382735-7382947
Coord A exon
chr16:7381634-7382734
Coord C2 exon
chr16:7381469-7381633
Length
1101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
GCCCCACCCCTCTTCTCCAGGAG
3' ss Score
9.25
Exon sequences
Seq C1 exon
GCACTAGACAAGATGGAGAAGGAATGGGCTTCCATCCTGTTCAACGTGCTGCCCTACAAGGAGACAGACACTTACATCCTCAAGAGCCCAGATGAAGCCTCGCAACTGCTCGATGACCACATCGTCATGACTCAGAGCATGTCTTTTTCACCGTACAAGAAACCCTTTGAGCAGCGCATCAACTCCTGGGAGACCAAACTGAAGCTGACCCAG
Seq A exon
GTGGGCCTTCCTCCCGTGGTCCTTCCCTCCAAAGGAGCACTGTCCACCGAGTGGCACCTGCTGTATTTGGGTGTAGCCTGCTGCACCTGTCTGCCCCAGCCCCTGGCTCTCTGACAAGCCTCCATCTGGAAGAGGGTACCGGGATGGATATGGCCATCCGTGGAGGAGGTCTAGCTCCTGAAAGAGGCAGTAAGGGCCGTGGAAGGAGTGAAGCTTAGTTAAACAATGTGGCTGCCTATGCTTGGGACAGTCTAGCCCTTGGAACTTTGTGGGCTGGACACAGTGAGACTCCGAGGCCCCTCTGTATCCTTTCCCACCCTGTCCGGAGCCTCCCACCCATCTCACTTTGTGATACTTTGAGACAGGGGCCAGGGTGTATGGGACAACAGATGTGTCGGGCTTTCAAGACCAGTGGCAGGGGCTGCCCAATGATGCCTGGGTGTGTCTCACAATACATATGCCCCTGAGGCCAGACGTCAGGTGAAGGAGGAATTCTCTATACAGCACTGACCCTGGGCTTCCCTGCTGTGTGCACGTGTGCATGCGTACGAACACACACACACACACACACACACACACACACACACACCCCTGTAATTCCAGCCCTACCTCCTCTCTCCCCCTAAGCTTAGCACAAACAACTCATTAACTCACCCACACCTGTCTGCAAGATCTTCCCAGTGAGGCTCTTGCTCGGAACCTATTAAAGGGCTTCACACAGATTGGGACCTTAGTGACTCAGAAACAAAATGACCACTAGTGGATTCCTCAAGAACAGGAGCCCATGCCCACTTCCCCTGATCATCTCAGTGTCCATTTAAGCCTGGCATGGCCCTGACACAGAGCTAACCATGGTGTCCACCTCATGAGCAGAGATTAATGAATCAGTTTGCAGTGATAGGAAGAAATGAGGTAAATCCCAAGTGTAGAGCTGGAAGGCAGAAAGGAAAATGGCTCCACGTAACATTACCTAGTAGACGCTAACACCGATGTGGGTGCTCTGCACTGCACTCTGAGGGGATGAAATGTCTCCATCATGGACACTAAACCCCACCCCGAGCCCTCACCTCTGGAGGTTCATGCCCCACCCCTCTTCTCCAG
Seq C2 exon
GAGGTGCTAGAGGAGTGGCTGAACTGCCAGAGGTCCTGGCTCTACCTGGAGCCCATCTTCAGTTCTGAGGACATCACCCGGCAGCTGCCCGTGGAGAGCAAGCGCTACCAAACCATGGAGCGGATCTGGAGGAAGATCATGAAGAATGCCTATGAAAACCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF083938=DHC_N2=FE(17.0=100)
A:
NA
C2:
PF083938=DHC_N2=FE(13.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAGATGGAGAAGGAATGGGC
R:
ATCTTCCTCCAGATCCGCTCC
Band lengths:
343-1444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]