BtaINT0050109 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49067961-49069552:-
Coord C1 exon
chr22:49069398-49069552
Coord A exon
chr22:49068139-49069397
Coord C2 exon
chr22:49067961-49068138
Length
1259 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
CTCCTCCCTGGTGGCTGCAGGAC
3' ss Score
7.27
Exon sequences
Seq C1 exon
TGTTACAGAGTCCTGGCCGCCGCCATGACGTCACTGAAAGGGCAGCCGTCCATCAGCGGCGGTGTGTACGAGGCCGTCAGCTACTACGTGCTCAACCCCAAGTCCATCACCATGGGACAGTTGTATGGGGAGTTTGACCTGCTCACCCATGAGTG
Seq A exon
GTGAGTGGCCCGGGACCCTTCCAGTGACCGCCGTGCTCCTAGACTCTGCAGCCTGTGGGTCCCTGGCCCCCTCCCTCCCCCAGCTGAGTGGGAGATTGGGAGCTCTGGCTCTGGAGCCCAACTTCCTGGGACTCTTGGCACCAGTGTGCTTCCTCACTGAGTGCCGCATCTCATCCCCCCAACCCCGGACCTTTGTCCCTCACCTGCAAAGTCGGGATAAAAATACGGGAGATGGCTGGGACAGTGTAGCACATGGCAAGCACTCAGGAAAAGTTGATGATTATTGTCAGCACCCACGAGAGCTGGTGCTCCCTCTTCGGGGCCTGTGCTCCCAGGCCGAGGTGTACATTTTAGGGGGAAGTGCATGGAGCTGACTAGAGGCCCACCAGTCAGCACTAGAAGGTTTTCTCTGGGGCTATTCTGTTTTTCCAGAGAAGTCTCCAGTCTCCTGCTGGGGTGTCTTCTTCTTGGTCCCAGTGTTCTGGGAACCCAGTGGGGAATGGGCACTGGAGAAGGGCAGTCACCTGTCTTTCTGAACATGGGCCTGTCCAGCTTCCCCTGTTTCTGGTGAAGGGTCTCAATCACAGCCACTCCAGGCTCTTATGTGGGCAGGTTGGGGTCCGGGGACCAGATCAGAAAAATGCCCTTCGACCCACCCACTTCCCTCGCATTTGGTGCCTCTGAAGTCTGAGCCTTCCTGGGTCTGTGGCAGGAACTAGATACTCTTGTGACTCTGCTTTCTCTGAGAGGTCATTTACCCCTTCTCCACCTCTGTGCATCTTCTGGGCCCATGTGGGCCTCTACTTCTGTGTTTCCTCCTCCCCATCTTCCTTTTCTTTTGAGGGTATCACTTTCCATCTTCTTTTAATGTAACTTTAGTGAGGACTCAGCAGGAAGAGGAGGAGAGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCCACGAACAGAGAAGCCTGGTGGGCTACAGTCTATGGGGTCACAAAGAGTCAAACATGACTGAATGACTAAGCACAGCACAGCAGGGAGAGAATAGAACCACACGTTTTCATTATATCATACTACACCAAAAAGTCCTATTTTCCCTACTATAATTTTTAAATGAATGAAGGTACTTAAGACAAAAAAAAAAAAACGCAGAGCAGGACCAGCCTGGATCCAGGTTTCCCTGGGAGACAGCTGTGCCCTTCCTCCCTGGCACCCACGGCCCTCCGCCTCCAGTGCCCACAGCCCTCTCCTCCCTGGTGGCTGCAG
Seq C2 exon
GACAGATGGGATCTTCTCCTCCCTCATCCGGATGGGGGCCATCACCTCCGACACCAGCAAGAAGTGGTACATGTTCGATGGGCCAGTGGACGCCGTCTGGATTGAGAACATGAACACGGTGCTCGACGACAACAAGAAGCTGTGCCTCAGCTCTGGGGAGATCATCAAGCTCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.7=100)
A:
NA
C2:
PF077289=AAA_5=FE(40.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTACAGAGTCCTGGCCGC
R:
TGTGAGCTTGATGATCTCCCCA
Band lengths:
330-1589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]