DreINT0057985 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34419908-34420760:-
Coord C1 exon
chr11:34420606-34420760
Coord A exon
chr11:34420086-34420605
Coord C2 exon
chr11:34419908-34420085
Length
520 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGT
5' ss Score
10.13
3' ss Seq
CTCACACTATTTTATTACAGGAC
3' ss Score
8.05
Exon sequences
Seq C1 exon
TGTTATGAAGTGCTGGCAGCAGCCATGACGGCTCTGAAAGGCCAGCCCTCAGTTAGCGGAGGAGAATATGAGGCTGTACAGACCTATGTGCTTAATCCAAAGTCCATCACCATGGGGCAGCTTTACGGAGAATTCGACCAGCTTACTCACGAATG
Seq A exon
GTGAGTGTGCTGTGCACTGGATTTTTGTGTTTTCTCGTACCGTACAGGTTGTTAAAGTCCACATAAACCAGATGCTGCGACCGTTTTTTTTTTTTTTTTCGTATTGTGACAGTTCCTAGAGAAACAGAATATTAAATTTAAAAAAAAATACCTCGAGCCGATTGGATTTGGTAAAGTTGGCATTTCATTCCGAAAGATCTGGAAAAAGGTTTGGGGAGAGTTATTACAACCTAACAGACTCCTCCTCCTCACCATTTCTGTTTGTTATCAAAACTGACAGCTGGAGGGGTGTGGTTAAGTATGTTAGCCACGCCCAATACCCCAGACAGATGCAATCTGACAATTTAACTGAAAACAAACAGGAAGTGCATTTTCAGATTTTAATTTTAGATTACATGGACAAACTTTTTTTTTCTTAATGACATGCACAGATGTTAAAACTAGCCATGAGCTAACAAAATCATATGTTAGTTTTGGTTTAATTTGTACTTTAGATGTAACTCACACTATTTTATTACAG
Seq C2 exon
GACAGATGGTATACTGTCTTGTCTCATTCGGGATGGAGCTTCATCCATGGAGCAGGAAAAGAAGTGGTACATGTTTGACGGGCCTGTAGATGCCGTGTGGATCGAGAACATGAACACAGTTCTGGATGACAACAAGAAACTGTGTCTGAGTTCCGGAGAGATCATCAAACTCTCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.7=100)
A:
NA
C2:
PF077289=AAA_5=FE(40.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTATGAAGTGCTGGCAGC
R:
AGAGAGTTTGATGATCTCTCCGGA
Band lengths:
330-850
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]