GgaINT0019480 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2895746-2897691:+
Coord C1 exon
chr12:2895746-2895900
Coord A exon
chr12:2895901-2897513
Coord C2 exon
chr12:2897514-2897691
Length
1613 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
3' ss Seq
CCTTCCCTCCCACTTTTCAGGAC
3' ss Score
11.41
Exon sequences
Seq C1 exon
TGTTATGAAGTCCTGGCAGCTGCAATGACGTCACTGCAAGGTCAGCCTGCAGCCAGTGGTGGGAATTACGAACCAGTCAGCTACTTTGTACTGAATCCCAAATCCATCACAATGGGCCAGCTTTATGGAGAGTTTAACTTATTAACGCATGAGTG
Seq A exon
GTAAAGTACAAAGCCTGCTTTCCTTCCTTCCAGCTTGGATACCCTTATCTCCTGGTCTTGAGGGTCTTCTCTTCAAAGCTGAGAACTCTTTAGGATAGTGGCATAAAATCAAAAGCAGTCAAGTTCTTATCCCTCACCGAACTACAATAGCCAGTCATGACAATTTAAGCTGACATCTTTTATTGTGCACTTGGCCTGGCTGCCAACACATGCCCAGACAGTACAGCAGCTCAGCTGGCAGTATGAACTGCACAACAAGGAATAATTCAATTGCTTTGGAGCAAATTCCTCTGCTCTAAGATAAAGCAGCTTAAAAACTTGCTTTGCTTCTGAAGGAGAGTGATCTCCGTACTGCACACATGGGTTGTTCTGTATGAATATGCTGGTGGCCTTCAGTAACGCTGAGGGATGACTTCCAGGCACAAAGGAGCATTTCATTCCCAATGCCAAGGCGCCTGATTGTCTATCTCAATAGCCCAGTTTTCCTCCTACTGCTTGAGTTTCCATCTGTGACTCACTTTATCCAGAGGCTGAGGTGTGAGAAGCAGTGTTAATCTCCCCATGGCTCTGTCCCCCACCACTTAGCAGCAATCTATTTAGTGTGTTCTATAAAACTGAGGGTACTAAATAGATATTAATCTCACTGCCTCTAGGAGAAGTGCAAGCAAGAGAGCACTACTGATGCCAAGAACCAGAGCTTCCAAGCCTGGGCTCTCATGCATCTTTACTGAAAGTTGTTCCATAGGATATTGCAGTTAAGCTTGACAGTTTATTTGTGATGTAACTCTATGCAAGGGCAGCACACAGACACATCAACATGACAAAAAGAGTACGGCAACCACATAAAACACATTTGCAGACATAAATCCATCTGTTTCAATCAGCTGAGCTTTAGAGCAGATTGTTTTCCCTTGATCCCAGTCAAGTACCCTGGACCTCACTATCACTGTATGGATATTTAATAATGGGAGTGGAGTTTAGGGTCTGAGCAGACACTACACCCCAGGTTTTTGTGTGCAGATTAAGTTCCTGCTGTCAACAGCCAGCATTCCTTGTGTGTCTGCTCTCCTGTTTGCTAGCTCCAGCAACACCTGGGTTCAGATGCAGCTGATGATGGGAACTTCAGTTATAAAGAGGGTAGAGTCAGACTCTTTAGCTTGGATTCACTCTCCTAACCTATAGTTACCCAACTAGAGCATTTGATTTAACAGCACAGTTGTCCCTAGACTTCCTCTACGCTTGATAGAGAATGAAATACGCTTCCATAAGAGCAGATAACTTATGACATGAACTTGATACTTGCAAGGGCTCTTCACTTTTCACTGAGGACAGAGATGTTAAAGGGAAACTTGACGTGTTATAGTTGGATGCTGTGAGGTCCTGCTCCTAATGGCCAGAGGTACTGCCTCATTGTGCCAACTCAGACTGGATATATCTCCACTAAAAGAAAGACTGAGATAAGCTTTTATGTGGCCCAATGGGGAGTGAGGCCCAGGTATGCTTGGGCACGTGGGCTAAGATAAGATTCTGGCTCTGTTGTTTTGTACGGTTGAAGCTTTGCTGTGGCCTTCTGCAAAAACAGGATGGACCAAGCCTTCCCTCCCACTTTTCAG
Seq C2 exon
GACAGATGGAATCCTTTCCTCACTCATCCGACAGGGAGCCATGGCCACTGACACTAGCAAGAAGTGGTACATGTTTGATGGGCCAGTTGATGCTCTGTGGATTGAGAACATGAACACGGTGCTGGATGACAATAAGAAGCTGTGTCTCAGTTCAGGCGAAATCATCAAGATGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(34.7=100)
A:
NA
C2:
PF077289=AAA_5=FE(40.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATGAAGTCCTGGCAGCTGC
R:
TGTCATCTTGATGATTTCGCCTGA
Band lengths:
328-1941
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]