BtaINT0050111 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49066859-49067260:-
Coord C1 exon
chr22:49067066-49067260
Coord A exon
chr22:49066979-49067065
Coord C2 exon
chr22:49066859-49066978
Length
87 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GGGGTGCCCATCCTCTGCAGGAG
3' ss Score
7.44
Exon sequences
Seq C1 exon
GCGATGACCATGATGTTCGAGGTGCAAGACCTGGCGGTGGCCTCCCCAGCCACAGTATCCCGCTGCGGCATGGTGTACCTGGAACCCAGCATCCTGGGGCTCATGCCCTTTGTCGAGTGCTGGCTGAGGCGTATCCCTGCCTTACTCAGGCCCTTTGAGGAGCAGTTCAAGTCCCTCTTTATCTCCTTCCTGGAG
Seq A exon
GTGAGGGAGCCACAGTGTGCTGGCCCAGGTGGGGGCAGCCGGGTGCTATGCCAACAGCCACAAGAGTGGGGTGCCCATCCTCTGCAG
Seq C2 exon
GAGTCCCTTGCTTTCGTCCGGTCCTCGGTGAAGGAGGTGATCGCCTCAACCAACAGCAACCTGACCACGAGTCTCCTCAAGCTGCTGGACTGCTTCTTCAAGCCCTTCCTGCCCAAAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(14.3=32.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGCGTATCCCTGCCTTA
R:
TTGAAGAAGCAGTCCAGCAGC
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]