RnoINT0048591 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7371097-7371500:-
Coord C1 exon
chr16:7371306-7371500
Coord A exon
chr16:7371217-7371305
Coord C2 exon
chr16:7371097-7371216
Length
89 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTGGCGCTTGTTCCCAACAGAGC
3' ss Score
8.36
Exon sequences
Seq C1 exon
GCAATGACCATGATGTTCGAGGTGCAGGACTTGGCAGTGGCCTCGCCAGCCACAGTTTCTCGCTGCGGCATGGTGTACCTGGAGCCCAGCATCCTAGGGCTCATGCCATTCGTTGAGTGCTGGCTAAAACATCTCCCTTCCATAATAAAGCCCTACGAGGAGCAGTTCAAGACACTCTTTGTCAAGTTCCTGGAG
Seq A exon
GTAGGTGAGGTCACGGGTATGCCCAAGCCAGACAGGTGGCAGAAGACTGTCACCACTGGCCACACAAGCCTGGCGCTTGTTCCCAACAG
Seq C2 exon
AGCTCCATCGCCTTTGTCCGAACCACAGTGAAGGAAGTGGTTGCCTCAACGAACAGCAACCTGACCATGAGCCTCCTCAAACTACTCGACTGTTTCTTCAAGCCTTTCCTACCCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(14.3=32.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATGCCATTCGTTGAGTGCT
R:
GCTCATGGTCAGGTTGCTGTT
Band lengths:
167-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]