DreINT0057987 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34418163-34419827:-
Coord C1 exon
chr11:34419633-34419827
Coord A exon
chr11:34418283-34419632
Coord C2 exon
chr11:34418163-34418282
Length
1350 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACT
5' ss Score
6.6
3' ss Seq
TATTACATTTATTTCCTCAGGAC
3' ss Score
9.21
Exon sequences
Seq C1 exon
GCGATGACAATGATGTTTGAGGTGCAGGATTTGGCGGTGGCCTCTCCTGCCACAGTTTCTCGCTGTGGCATGGTGTATCTGGAGCCGAGCATTCTGGGTTTGACTCCATTCACAGAGTGTTGGCTCCGAACAATCCCTGACATGTTTCGGCCCTACGCGGATCAAATCAACTCGCTCTTTACAAGGTTCTTGCAG
Seq A exon
GTGACTGGTCTTAGAGTGTTTTTGTTAAATTCGTTAAGTAAAATTAAACTAAAAGACAACAGAATGTGGGGTGGCACAGTGGGTAGCGATTTCGCCTCACAGCAAGAACGTCGCTGGTTCGAACTTTGGCTGGGTCAGTTGGCATTTCTGTGTGGAGTCTGGGTTTTCTCCCCGTGTTTGCATGGGTTTCCTCCAGGTGTTCCGGTTTTCCCCACAGTCCAAAGACATGCGCTATAGGTGAATTGGGTAAGCTAAATTGTCCGTAGTGTATGTATGTGAATGAGTGTGTATGGGTGTTTTCCAGTGATGGGCACCAGCTGGAAGTAAATATGTTTACTTATCTATATTTATTCTATATTCATTCAGGTTTTTATATTTTTTTCAAAAGTATTATTGAATAATGTGCAAATGATTATATCATTTGATTTTATGATTTATGTATAATACAATTCTGTAAAGTAATATTTTCTCTCTTTTAGTAGATACTGTATATTATTTGAGAGATTTACATTGTCTAACAAACAAGTTATTCTAATTTAATTTGCATTGTAAACCTATAGTAAAAAATATATAATTATTTTCTTTTTTTTAATATTTAATTTAAATATGATAATTTCAATAAATATGACATAAGTAAAGTTAATTAAAGATAATAAAAATATACATATTTATGGAAATGTAATATTTATACAAAAATAATTATATACATATAATGATCATATTAATAATTATTATATTAACATAAATATATACATAATTAGATTTATTTTTAAAAAAGTAATTTCATAGACAAACATTCATACATTTTCTTTTCAGCTTAGTCCCTTTATTAATCAGGGGTTACCACATTGGAATGAACCACCAACTTATCCAGCATATGTTTTATGCAACAAATGCCTTTCCAGCTGCAACCCAGTACTAGGAAACACCCATACACTCTCATTCACACACATACACTACAGAAAATTTAGCCTACCTAATTCACCTAAAACTCCTTCTTGCTGTGAGGTGACAGTGCTACCCACTGCGTCACCACGCTGCCCCTAGACAAAAACAACATTTGTAAAATATTACTGTATTATATTTCTTAATATATTAGAGTAAAATATGGGACTGCACAGTATTGTATATGTTTGCAAATGTCATTTCATTGATTGTACAGTAGGTCATGTAATCATTCACTTTTAGTTTGTTTGTCATACATTAGTATGATGTAATATTAGTCATGTTTTTATTGATTTATTTCTATTTATATGAAGTAGTGTAAAAGTGTAAAAGGTTTTTTAGTAATTGTGTAAAAGGTAAAGGTAAAAGGTTTTTGAGGTGTTGTTATTACATTTATTTCCTCAG
Seq C2 exon
GACTCCATCAGATTTGTCAGAGAGTCCATAAAGGAGGTGATCACCTCCATGGACAGCAATCTCACCTGCTCTCTGCTCAAACTACTGGACTGCTTCTTTCAGCCGTTCATCCCACGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(15.0=33.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGATGACAATGATGTTTGAGGTG
R:
GTGGGATGAACGGCTGAAAGA
Band lengths:
310-1660
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]