GgaINT0019482 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3071621-3072398:+
Coord C1 exon
chr12:3071621-3071815
Coord A exon
chr12:3071816-3072278
Coord C2 exon
chr12:3072279-3072398
Length
463 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACC
5' ss Score
9.24
3' ss Seq
GTTCCTGCCTCTCCTTACAGGAA
3' ss Score
12.53
Exon sequences
Seq C1 exon
AGTATGACCATGATGTTTGAAGTCCAGGATTTGGCTGTTGCATCCCCTGCCACAGTGTCCCGTTGTGGCATGGTTTACCTGGAACCCAGCATCTTGGGGCTGGAGCCCTTCACGGAATGCTGGCTGCAAAAGCTCCCAGATGTCATGCAGCCCTTCTCACAGCAGCTGGCATCTCTCTTCACGAGGTTCCTCAAG
Seq A exon
GTAACCTATCGTACTGCTACAGCCCTTCCACGGATGTCTTATTTTCTAATTGTCTCATAGACACAGTCATCCTTAGTGCAGCTCCATTTCTTCCATTTAACAGTGGAGTTACTCTAGGGATGAAGTCATACGAATAAGTCTTGCTATTTCTGCTCTGCTCCTGAACTCAGGACTGCAAAGGAAAGCTCTGAAAAGAGCAAACAACAGCAGTGATGTGAGCAGTGACTCACAAGGCAGGCCCAAAGGCTTCTTGCAGTTAAGAGTCAGTCAGGTGGTTTGACTTAATTCTCTCTAGTCAGAATGGTGGTATTTGTGACAGAGCAAGAAATGGCAGCATTCTCAGTTGTACCCTCCATGCTACATGTAGCCTGCAGGGAGACAAAGGGAAACCAGAACAGTAGAAGGTAAGTAAAGTTCAATGTGTTGGTTGGTGACGCTGAGCTGTTCCTGCCTCTCCTTACAG
Seq C2 exon
GAAGCTATTGTCTTTGTCCGGGGATCTGTGGAGGAGATAATAGCCTCAACAGATGGCAACCTCACAAGGAGCCTCCTCGTGCTATTGGAATGTTTGTTTCAGCCTTTCATTCCTGTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=PD(14.3=32.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACCATGATGTTTGAAGTCCAGG
R:
CTCAACAGGAATGAAAGGCTGA
Band lengths:
311-774
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]