BtaINT0050115 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49064948-49066308:-
Coord C1 exon
chr22:49066201-49066308
Coord A exon
chr22:49065089-49066200
Coord C2 exon
chr22:49064948-49065088
Length
1112 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACA
5' ss Score
5.49
3' ss Seq
TGTGCCTCCTGTGGTTCCAGGTC
3' ss Score
10.17
Exon sequences
Seq C1 exon
GTGGCCTTGCTCTTCCCAGAGGAGGGGCTGGTGTTTGATTATAGGCTGGAGGACGGTGGCATCAGCAGCACCAGTGATGACGACGACGAGGAGGAGGAGGGCAAGCAG
Seq A exon
GTGACAGAGGCCTGGTCCCAGGACCAGCACGGGGAGCAGGGAGGGGAGGGAGGCGGTCAGGTGGTAGCTGTCCTACTCAATGGCTGCAGAGAGGAGGCCTTGCTGATGGCCACAGGTGTCATACTGGGGTTATTTGCGTCATCTCGTGAATCCTCACAGACCCACAGGGTGGTTACTAGTGGGTCCATTTCCCAAACAAGGAAACTGGGGCTCAGAACAGTCATACCCAGCTAGTCGGTGTCAGAGCTGGCCTTGAACCTGGGACTGGGGGATGACAGAGTGCCTCCCTTCTCAACCATGTGCACTGCCTGTCCCATCTTGCTGCTGAGCCCAGGGATTCATCAACTTGGTTCTACTTAAGAGCCCCATTTGCCCAGGGGTGGGGCTCCCCAAGAGTGGAGGAGTAAGCCCCCATGGCCTGTCTCAGTGTCCCCATCACTCCTCTCAGCCAGCAAGGGCTCCATGAACCTACCCTCGTGGCATCAGGACCCCAGCCCAGAAGGAGGAGTGGCCAGAGAGGCACCTCAGAGGTGGTCGCCACACACGGTCCTGCTGGGGGTCTCACACATGAGTCTAACCATCAGTACCATCCCCAGTGGGACATGTTTATTTGACCACAGAGAGGAAGGTCTACAAGTTGAGTCAGGGCTGTGGGTGGGTGAAGGGATTCGTGCAGTTGGGGATGGCAGGGGAGACCAGGCCAGGTGACTTCTCAGTATCCAGGTGATGCCAGTCCCACAGTTGTGGCCCCCATAGGCTTGGGAAGCCTAAAGTTAACAGCAAAGAGCTTTGCATTCTGGGTTGTCCAGTTCCCGGAGGACTTCCCTCATATGCAGAGACCCAGAGACTGGCCCCACTGGAGGTAAACTGGATGCGGTGAAGCCTTCACTTGGGCAGCTGTGTGCAGAGAGCCCCGGATTCCTGGAGGTTTGTTCCGGGAGTCCCCCACCCTGTGCGTAAAGCAGGGCAGAGGGACTCCTATTTCTACCAGGAGCAGCCCCTCCGCTGGACCCTCTTGCCCGACCGTGCAGCTCCTTGCCCTCTTGGTACACTCAGCCTGGACGGGAACGAGGAGAGGTTTCAGGCCCAGCCTGTGCCTCCTGTGGTTCCAG
Seq C2 exon
GTCGCCTGGGTGAAGTGGATGGACTCCTCCACCACATTCACCATGATGCCAGACACCAACTACTGCAGCATCATCGTGCCAACCACGGACACCATCCAGATGTCCTACCTGCTAGACATGCTGCTCACCAACCACAAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(12.0=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCCTTGCTCTTCCCAGA
R:
CTTGTGGTTGGTGAGCAGCAT
Band lengths:
246-1358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]