GgaINT0019485 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3073448-3074837:+
Coord C1 exon
chr12:3073448-3073549
Coord A exon
chr12:3073550-3074696
Coord C2 exon
chr12:3074697-3074837
Length
1147 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAAA
5' ss Score
7.3
3' ss Seq
AATGCACTCATACCTTTCAGATG
3' ss Score
8.49
Exon sequences
Seq C1 exon
ATCCAGTTACTCTTCCCAGAAGAAGGACTGGTTTATGACTATAAACTAAGTGCTGGACTCAGCAGCACTGAAGATGATCTCGATGAGGATGTCGTTTGGGAG
Seq A exon
GTAAAATAGTTCACCTCCATCTCTAAGATGAGGAATTTGAGGGAGGGACTGGGAAGCAAAACAGAATCTTCTCATCAAAGACAAATAAGAAAAGCCTATAAGAAACCAGTGAGAACGCTTGAAGTAAAACCAAGCATTTCATTAAGGAGGGAAGGTAGTTTTTGCCCTCAGGGTTGTGAAGCAGATTTTTCAAGCCTTAGCCAGGATCCTCTACCAGTGCTCAGGAAGGTGAGAGGGCTTTAGAAATGTCCCTGCTGCAGGGAGAAGCTCAGATGCAAAGGTCTGTCTGCATTTAAAAGCAGTGCACGACAGAAAAAAGAGCTGTGTGCAGCGAAGTCTGGGCAGACAGATATGCCATCTTTTCCACAGCAGATAGTAGAGCAGTAGGGCATGCAAGGCCCATCTGACTACCAGTCACCAGTCCCTGGGCTGGAGGTGAAAAATAAGAGGAAAAATGCTCTGATTTCAGGAAGGAGAAGCAAAGTAGGGAGCTCTGTGTGAGCGTCAAATGCTTAGCAGAAGCTGCTGGGGCCACCTCGGTGTCTGAGAGGATGCCATGTGGGGTGCTCAGGAATGTGTTTTTTGTCAGTGCTGTGTAGCACATCCCTGGCAAAACCACTGTCTGACTTGTATAGTGGCCCCTGGGGCATTAGACTGTGGCTTGATCCTAGCACAAGTCATCCACATCCTGTATAATCTGCAACCTCAGTGCACCTCAGTGCAGCAGAGCTGATGGCACCAAAGATGAAGATAGGATCCCAGCAAAATCTTCTTCAGCCTTCTGTTGTGTGGACACCTACAGCACAGCCTACCTCAGAACAGAATTCCACTTCTTGCAGATATCACAAATGCTTTGTCAGTCTTTGATTGCAGTTTTCAGAAGGAAAGGCAAATGTGTTGCTGCTGGGGCAATGATCCCTAACTCTGAGCTACCTCCCTCCCAGAGGAAGCAAGTCAGGTGATGACAGCTTTGCACTGCAGAAGGCAATGGGAAGCAAGGACTAGACAGAGGGCCTGGGAACCTGATGTCCTACTGAGCTGCTACACAAGGAGCTGTGACAGGGGAAAACACAGCAGAAGTACCGTTTTCCTATTCTCATAGCAGATAAATGCAGCTGTCCCCTCTAAATGCACTCATACCTTTCAG
Seq C2 exon
ATGCACTGGGAGAAGTGGCTGGACCCTACAGCAAGGTTCACCATGGTTCCTGAAACCAACTACTGTGACATTATCGTGCCCACAGTGAACACAGTCCGAATGGCCCACCTGCTGGAGCTGTTGCTTATCAACTGTAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(12.0=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGTTACTCTTCCCAGAAGAAGG
R:
TGATAAGCAACAGCTCCAGCA
Band lengths:
230-1377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]