RnoINT0048595 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7369302-7370629:-
Coord C1 exon
chr16:7370399-7370629
Coord A exon
chr16:7369443-7370398
Coord C2 exon
chr16:7369302-7369442
Length
956 bp
Sequences
Splice sites
5' ss Seq
GCTGTTGGC
5' ss Score
-15.53
3' ss Seq
TGACCTAGATGTGGTTCTAGGTT
3' ss Score
3.24
Exon sequences
Seq C1 exon
ATAAAACTAGCTTTCCCAGAAGAAGGGCTGGTGTACGATTACCGACTGGATGACGCAGGGATCAGCAGCACTGAGGATGACGATGAGGACGATGAGGAGAGCAAACAGGTGGCCACGGCGCTGCCCGCCCAGGAAGGAGGGATGGTGAAGCCCCCTGGGCTGTGGGATCTCCCCCCTCGGGATAGTGGCCACTTGGAGAAAGCCACGCTGACAGCCAGCAGGTCAGAAGCT
Seq A exon
GTTGGCTGGTGACACCATCACAAGGAGCCTCACACCCTACCAGCTGTCTATCACTGTGCTCATTTCACAGGCGTGGACACTGAGACACAAACCTCGCATAATCAGTCAGTCAGTGGGAGAGCCGGACTTGAGTGTGGAGCTCAGAGGCTTCAGTGTGCCTTGCTTCCCAGACAAATGTTTCTTCTCTACTGGCGCCGAGTCCAGGGGCCGGCCCTCTTTTCTAGTTAACAGCCCCCACTTTTCCTGAAGCCTCCCTCCCTAAGGGCCCAGGAGTGCCTGGTGCCCCGCTGTACTGTCCCCATCTCAACTACCAGTCAATCAGAGCTCTTGTTAGGGCCCTCGAGCCCCAGAGGAGGTGACAGAGTCACTACGTAGAGTCATACTGTGGAGCTCAGAGCACATTAGGGTCTAAGCATCAGAACGGCCACAAGTAGGACCTGTCGCTTTGGCCAAACTGAGACTTCGTCAAAGGAGTTTTGCAAGGGTCGTGGGTGAGGGAATTTGAGAGGCAGGAGCAGTGAGGTGACAGTACCAGGTGGCCTCAAGCATCCAGCTGTCAGTGCCCTGGGCTCTGGTATCCCCACTCCTCGTCAGCCTCAAAATAAACAGTGAGCACCGTGGCATTCCCAGGCCAGTCAGTTCCCAGAGCATCTTCTTGCCAAGACTTAGGGGCTGGCTGTGGGTAGGAAAGCTACCACCTCAGCAACTGCAGTCAGGTAGCCCCGACTTCTCACTGTGTTCAGAGAACCTCCATTCCTGGCCGTCTGTGGTGGGAGCTTCCCATCCCATGAGGACAGGAGGAGAGCAGAGGACAGGAATTCCTGTCTCTGTCAGAAGTAGCTCTTTCCCCCGATGTTCTTACCAGGGCCCAGAAGGACAATTCCTCTTCCTCCTGCTGTGGGGCCACAGGAGTGGGGAGGGCGTTCAGACCCATCCTGACCTAGATGTGGTTCTAG
Seq C2 exon
GTTGCCTGGGTAAAGTGGATGGACTACTCGGTTCCATTCACCATGATGCCAGACACCAACTACTGCAACATCATTGTGCCCACCATGGACACCATGCAGATGTCCTACCTGCTGGGCATGCTGATCACCAACCACAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(12.0=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGAAGGGCTGGTGTACGA
R:
GCTTGTGGTTGGTGATCAGCA
Band lengths:
353-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]