DreINT0057990 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34417270-34417732:-
Coord C1 exon
chr11:34417628-34417732
Coord A exon
chr11:34417411-34417627
Coord C2 exon
chr11:34417270-34417410
Length
217 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
AGATTTTTCATATACTTCAGGTA
3' ss Score
7.42
Exon sequences
Seq C1 exon
ATCCAACTGTGCTTCCCTGAGGAGGGAGCAGTTTATGATTACAATTTAGATGATGCAGGAATAAGTTGTTTTGATGATGAGGACGGAGAGGGTAAAGAGAGGAAG
Seq A exon
GTGAGAGAATGTTTTTGAACATTTTTGAAAATTATTTTTGGTTATAAAACATTATGTGTGCTGTATCTTGAGCTGAAACTTTACATACACACTCAAGGGACATCAGAGACTTGTTTTAATTTTTTTTTTCAAAGGGACCTCCTTTAATGTGTGATGATTATGCAAAAGTAAAAGTCATTTTTTGAAGTGCATTAATTAGATTTTTCATATACTTCAG
Seq C2 exon
GTACAGTGGGTCAGCTGGATGAAATATGCCCAGGAAGTGGTCATCACCCCTGAAACAAGATACTCAGACATCATTGTGCCCACAGTCGACACCGTTCGCATGTCTTTCCTGATAGACATGCTACTTTCCAATAAGAACCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(12.5=70.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAACTGTGCTTCCCTGAGGA
R:
AGGGTTCTTATTGGAAAGTAGCATGT
Band lengths:
244-461
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]