MmuINT0050527 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32097922-32099262:-
Coord C1 exon
chr14:32099155-32099262
Coord A exon
chr14:32098063-32099154
Coord C2 exon
chr14:32097922-32098062
Length
1092 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGCC
5' ss Score
3.48
3' ss Seq
TGAACCAGATGTGATTCCAGGTT
3' ss Score
0.28
Exon sequences
Seq C1 exon
GTGAAACTAGGTTTCCCAGAAGACGGGCTGGTGTACGATTACAGACTGGATGACGCAGGAATCAGTAGCACTGAGGATGATGATGAAGAAGAGGATGAGAACAAACAG
Seq A exon
GTGGCCACAGGGATGCCCGGGACGGAGGGAGGGGAGAGCCGGGCTGGGCTATGGGGATTTCCCCCTCAATGAATAGTGGCCACTTAGGGAAAGCCACACTGACAGGTGGCAGGTCAGAGGTGTTGGCTGTTGACATCATCACACAGAGCTTCGCAATCTGCCAGATGTTTATTATTGTGTTCATTTCACAGACATGGAACTGAGGCACAAAATTCTCATACTCAGCTAGTCAGTGTGAGAGCTGAGCTTGAGCACGGAGCTCGGAGGCATCAGTATGCCTCCCAGACAAATGTTTCTTCCATACTGGTGCTGAGTCCAGATGCCAGCCCTCTTTTCTAGTTAAGAGCCCCCATTTTTCCTGAAACCTAGCTCCCTAAGGGCCAGGAGCATGCCTGGCACCCTGCTTTAGTGTCCCCATCTTAACTACCAGCCAATCAGGGCTCTTGAGTTCACCATTATTCCAGGGTCAGGGTCCTCAAGGCCCAGAGGAGGTGATAGAAAGTCACTATGTAGAGTCCTGCTGTGGAGCTTTGAGTACATTTGGGTCTAATCATCAGAACAGCCACAAGTGGGACATGTTGCTTTGGCCAAACTGACACCTCCATTGAAGGAGTTTTGCAAGGGTCATGGGAGAGGGAATTTATGAGGCAGGAACAGTGGGAGACAGTACCAGATGGCCTCTAGCATCCAGCTGTCAGTGCCTTGGGTTCTGGTGTCGCCAACCCCTTGGTTAGCCTAAAAATAAACAGTGAGCACCTTTGCATTCCTGGGCTATTCAGTTCCCAGAGCATCTTCTTGCCAAGACCTAGGGACTGGCTGTGTGTAGGAAGGCTGCCACCTCGACAACTGCAGTCAGGTAGCCCCTACTTCTCGGCTGTGTTCAGAGAACCTCCATTCCTGGCAGTTTGTAGTGGGAGCCTGCCATCCCATGTAAAGAGCAGATGACAGGAATCCCTGTCTCTCTCAGAAGTAGTTGTTCCCCTGATGTTCTTGCCGATGCCCAGCGGGACAATACCTCTTCCTCCTGCTGTGGGGCCACAGCCAAGAGTGGGAAGGGATTTCAGACCCATCCTGAACCAGATGTGATTCCAG
Seq C2 exon
GTTTCCTGGGTAAAGTGGATGGACTACTCGGCCCCATTCACCATGATGCCAGACACCAACTACTGCAACATCATTGTGCCCACCATGGACACCGTGCAGATGTCCTACCTGCTGGGCATGCTGCTCACCAACCACAAGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(12.0=72.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACTAGGTTTCCCAGAAGACGG
R:
GGCTTGTGGTTGGTGAGCAG
Band lengths:
246-1338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: