BtaINT0050116 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49064644-49065088:-
Coord C1 exon
chr22:49064948-49065088
Coord A exon
chr22:49064805-49064947
Coord C2 exon
chr22:49064644-49064804
Length
143 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
CCGTGACCCCCCTCTCCTAGGTG
3' ss Score
8.66
Exon sequences
Seq C1 exon
GTCGCCTGGGTGAAGTGGATGGACTCCTCCACCACATTCACCATGATGCCAGACACCAACTACTGCAGCATCATCGTGCCAACCACGGACACCATCCAGATGTCCTACCTGCTAGACATGCTGCTCACCAACCACAAGCCC
Seq A exon
GTGAGTGCCCCCGCCACCCCAGCACCCCCTCACCCCAAGGCCTAGGCCGGCAGTGACCGGCCTCCCGCACTGACAGGGCAGCAGCTCCCACTGCGCATCGGGCCCTGTGAGGACGCTCTGACCCCGTGACCCCCCTCTCCTAG
Seq C2 exon
GTGCTGTGCATCGGGCCCACAGGCACAGGGAAGACCCTCACCATCTCCAACAAGCTCCTCAAAAACCTGCCTCTGGAATACATCAGCCACTTCCTCACCTTCTCTGCCCGCACCTCGGCCAACCAAACGCAGGACCTCATCGACAGCAAGCTGGACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(12.0=72.3)
A:
NA
C2:
PF127752=AAA_7=FE(18.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACTGCAGCATCATCGTGC
R:
CTTGTCCAGCTTGCTGTCGAT
Band lengths:
242-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]