DreINT0057991 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34417032-34417410:-
Coord C1 exon
chr11:34417270-34417410
Coord A exon
chr11:34417193-34417269
Coord C2 exon
chr11:34417032-34417192
Length
77 bp
Sequences
Splice sites
5' ss Seq
CCTGTAGGT
5' ss Score
3.22
3' ss Seq
TCCCTTCTCTAATTTGTCAGGTC
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTACAGTGGGTCAGCTGGATGAAATATGCCCAGGAAGTGGTCATCACCCCTGAAACAAGATACTCAGACATCATTGTGCCCACAGTCGACACCGTTCGCATGTCTTTCCTGATAGACATGCTACTTTCCAATAAGAACCCT
Seq A exon
GTAGGTCATTCAACATAGAGTCAACATAATGCCTTTCATATGTGTTGCTAAGCTCGCTCCCTTCTCTAATTTGTCAG
Seq C2 exon
GTCTTATGCATTGGGCCCACCGGCACAGGAAAGACCCTGACCATATCAGACAAGCTTCTGAAAAATATGCCTGCTGAATACATAACTCACTTCCTGATGTTCTCAGCTCGTACCTCCGCCAACCAGACACAAGACTATATTGACAGCAAACTGGATAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.019
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(12.5=70.8)
A:
NA
C2:
PF127752=AAA_7=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTTCGCATGTCTTTCCTGA
R:
CGGAGGTACGAGCTGAGAACA
Band lengths:
168-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]