GgaINT0019486 @ galGal3
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
NA
Coordinates
chr12:2900986-2901739:+
Coord C1 exon
chr12:2900986-2901126
Coord A exon
chr12:2901127-2901578
Coord C2 exon
chr12:2901579-2901739
Length
452 bp
Sequences
Splice sites
5' ss Seq
CCAGTACGT
5' ss Score
7.19
3' ss Seq
ATTGCTGGCTGTGCTTCTAGGTT
3' ss Score
7.73
Exon sequences
Seq C1 exon
ATGCACTGGGAGAAGTGGCTGGACCCTACAGCAAGGTTCACCATGGTTCCTGAAACCAACTACTGTGACATTATCGTGCCCACAGTGAACACAGTCCGAATGGCCCACCTGCTGGAGCTGTTGCTTATCAACTGTAAGCCA
Seq A exon
GTACGTGCCCACCCTTGCCTTTGATTTTGTACTCAACGTTTTTCCTCTTCAACAGGGGTACCTTTTCCTCTCCCAGGGCAATCAGAACCTGACAGCTACCTGATGCTTTTAAATTAGTTCCCATTCTTATGGATCTGCATTTCTCTGCTCAGGAGCTGTGCCTAAGTAACAAGGGATTAACATTCACTCCCCAGACACTGTGACAAATGCATCAGTTTCTGGATCCCCCCCCTCCTAGGATGGTGGCCCAATACTATCCCCCTTTACCTGTTTCCTTCCACTGCATTTCATACCTTTCTTGTTGGGTTCCTTCCATGCTGAGAGATCTGTTAACCTGAATGTCTTTCCTTAGTGAAGAAGAAGCAAGCCTTCTGTCTTCTCTGAGCTTTTGGAAGCCTGAGAGGGTAGGAACCTGTATTGCCTTCAGCAAGTATTGCTGGCTGTGCTTCTAG
Seq C2 exon
GTTCTCTGCATCGGCCCCACTGGCACAGGGAAGACTCTCACAATTACAGACAAGCTTTTGAAGAGCTTACCTGTCAAATACGTCAGCCACTTCCTGACATTTTCTGCACAGACCTCTGCCAACCAAACTCAGGATCTCATTGACAGCAAACTGGAGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(12.0=72.3)
A:
NA
C2:
PF127752=AAA_7=FE(18.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCACTGGGAGAAGTGGCT
R:
CTCTTCTCCAGTTTGCTGTCA
Band lengths:
302-754
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]