RnoINT0048596 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7369026-7369442:-
Coord C1 exon
chr16:7369302-7369442
Coord A exon
chr16:7369187-7369301
Coord C2 exon
chr16:7369026-7369186
Length
115 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CCTGCTCACCACACTCCCAGGTG
3' ss Score
7.14
Exon sequences
Seq C1 exon
GTTGCCTGGGTAAAGTGGATGGACTACTCGGTTCCATTCACCATGATGCCAGACACCAACTACTGCAACATCATTGTGCCCACCATGGACACCATGCAGATGTCCTACCTGCTGGGCATGCTGATCACCAACCACAAGCCT
Seq A exon
GTGAGTGCCCCGAGGCTCAGGTCAGGGCGTGGCTAGTCCTGCGCACCAACAAGTTGGTAGTTCCCTCCTCGTCCTCTCTGCATGTGCCCCACCTTCCTGCTCACCACACTCCCAG
Seq C2 exon
GTGCTGTGTATCGGGCCGACGGGCACAGGGAAGACGCTCACAGTCTCTAACAAACTCCTCAAGAACCTGCCACTGGAATACATCAGCCACTTCCTCACCTTCTCAGCCCGCACTTCAGCCAACCAGACCCAGGACCTCATTGACAGCAAGCTGGACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.056
Domain overlap (PFAM):
C1:
PF127752=AAA_7=PU(12.0=72.3)
A:
NA
C2:
PF127752=AAA_7=FE(18.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATGATGCCAGACACCAAC
R:
CCAGCTTGCTGTCAATGAGGT
Band lengths:
256-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]