BtaINT0050123 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49058709-49059447:-
Coord C1 exon
chr22:49059251-49059447
Coord A exon
chr22:49058845-49059250
Coord C2 exon
chr22:49058709-49058844
Length
406 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGG
5' ss Score
5.25
3' ss Seq
CTACCCAAACACTGTCTCAGGGC
3' ss Score
4.22
Exon sequences
Seq C1 exon
ATGATGCAGGTGATCGAGGAGTACATGGACGACTACAACCAGATCAACACAGCCAAGCTGAGGCTGGTGCTCTTCATGGACGCCATGAGTCATGTCTGCCGCATCAGCCGCACCCTGCGCCAGGCGCTGGGCAACGCACTCCTCCTGGGCGTGGGTGGCAGCGGCCGCAGCTCCCTCACGAGACTGGCCTCGCACAT
Seq A exon
GTGAGGGCCCCCAGGCATGGTGGGCGGTGGGTGGCTTGGGGCAGACTCATGTCCATCCCTGTCCTTCCTCATGTTCCGCACTGGGGCAGACCCACTTGGCCCACAGGCTTCTAGAAGGCCTGGGCTCCAAGGAGAGGCAGCAGCAGGGCCCTGTGATGCTGCGGGGAAGGCAGCTGGTAGCTGCAGGCATCCAGGAGGGCTTCCTGGAGGAGGTGGCCATGGGCCTTCTCTCTGAATCAGAGCTTGGCAGATGGAAGGGAAGGGCATTCCGGGCCGAGGGAGCAGCCTCAGCAAAGGCCTGGAGGCCAGAGAGCAGGTTGAGGGCCAAGGAGTCAGCAAGTCTGCCCAGGACGATAGCAGATGGCTCAGGTGAAGCCTTGAACTCTCTACCCAAACACTGTCTCAG
Seq C2 exon
GGCCGAGTTCGAGTGCTTCCAGATTGAGCTGTCTAAGAATTACGGCATGACAGAGTGGCGTGATGACGTCAAGAAGGTCTTGCTCAAGGCTGGCTTGCACAACCTGCCCATCACCTTCCTGTTCTCAGATACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:48
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(19.9=81.8)
A:
NA
C2:
PF127802=AAA_8=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCAGGTGATCGAGGAGT
R:
TGGGTATCTGAGAACAGGAAGGT
Band lengths:
331-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]