DreINT0057998 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34407428-34408391:-
Coord C1 exon
chr11:34408195-34408391
Coord A exon
chr11:34407564-34408194
Coord C2 exon
chr11:34407428-34407563
Length
631 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGA
5' ss Score
5.58
3' ss Seq
GACCGACCTTGTATTATCAGAGC
3' ss Score
6.06
Exon sequences
Seq C1 exon
CTGGCCCGTGTGATGGAAGAGTACTTGGATGATTATAACCAGACCAGCACCTCTAAAATGAAGCTGGTGCTTTTCATGGACGCCATACAGCATGTGTGTCGTATCAGCCGTATCCTGCGCCAGCCCCTCGGGAACGCTTTGCTGTTAGGCGTCGGTGGCAGTGGACGCCAGTCTCTTACCAGGCTTGCCACGCACAT
Seq A exon
GTAAGAGCTGCTGAAGCGTTTATTGTGCTGAATCCTAAAAAATATAATTAGCATTACTAACGAGAGTCCGTTCAATAAGGCTTCATTTGATCAAAAACAGAAGTCATACTGGCCCATTTAATTGGAGCTCTAACAGTTTTGACATCAATACTTCTGTCAAAGTGATTCTTGCCTGTAATCATTTTGCTTGCCACCCATGTAGAACATGAAAGAATTGTTATGTCATGCCTGGAACACATGCCAACAAGATTCAATATCTGAACACGTCTAATAAATCGTTACATATGTAATGCAAATGCATCATTTTAGATCAAATATTTACATACATACAAAGATTTTTCATATTAATTGGTGCAATGTGTTGTTTAAAGTGACACTATATATAAATACTCCCTATATTTATTCTTTTTAAACTTCACTTCAATCTTTTCATCGTTGGACCACAAAGAAATTATTACAGTGAGGCTGCCATTATTTACCACCATCAGTCAAAATAGGAACACCCACCTCATTGAAGTCCCTTAGAAACATATTGAACAGTCATTCATTTATATGGAAACCAGGCGTCAGTGATACACCAAATAAAAGACTGACACACATTTTGTCTTTGTGACCGACCTTGTATTATCAG
Seq C2 exon
AGCTGAGTATGAGTGCTTCCAGATTGAACTCTCCAAAAACTATGGCCTCCTGGAGTGGAGAGAGGACATCAAGAGCATCATGCTAAAGGCTGGCATGCAGAACGTGCAAATCACCTTCCTGTTTGTAGATACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(19.6=80.3)
A:
NA
C2:
PF127802=AAA_8=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCGTGTGATGGAAGAGTAC
R:
TGTGTATCTACAAACAGGAAGGTGA
Band lengths:
329-960
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]