RnoINT0048604 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7360535-7361338:-
Coord C1 exon
chr16:7361142-7361338
Coord A exon
chr16:7360671-7361141
Coord C2 exon
chr16:7360535-7360670
Length
471 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGG
5' ss Score
6.57
3' ss Seq
ACTCAAACTCCCACCTCCAGGGC
3' ss Score
7.46
Exon sequences
Seq C1 exon
ATGATGCAGGTGATCGAGGAGTACATGGAGGATTACAACCAGATCAACACAGCCAAGCTGAAGCTGGTCCTCTTTGTGGATGCCATGAGCCACATCTGCCGCATCAGCCGAACCCTGCGCCAGGCTCTGGGCAACGCGCTCCTGTTGGGCGTGGGTGGCAGTGGCCGCAGCTCCCTCACTCGGCTGGCCTCCCACAT
Seq A exon
GTAAGGCATCATGGCGGGCAGTGGGTGGCATGTGGCAGACTGTTTATAACAGATGCCTTCCACCACGGTAGAATCCTGTTGTCACCCCAACATAAACCTACTCAGCCCATGAGATTCTAGAAGAGCTGCAAACGGGACCTGAACCCCAAGAAAAGGCAGCAACAGTACCCTGCGGTGCTATGGGAGGGAGGTTAGAGGAAAGCATCCCGGAAAGATGCCTAGGAAAGAGACTCGTGGGCCTGTTTTCAGAATCCGAGCATGGAGGGTAGGTGGTGGATGGGGCAGGAATCTAGGCTATAGGAATCGTAGGCGTAGGTCAGGAAACGGAGAGAATGGGTGCAGGGCCTAGGGAAGCTACAAGTCCAATAGGAGCAAGATGCCAGGTGGCTAGCGGGGTCTCTGAGCACCCACCACCCAGCAGCACCTGGCTCCAGGCCTCTGACACGCCTTCACTCAAACTCCCACCTCCAG
Seq C2 exon
GGCGGAATATGAGTGCTTCCAGGTTGAGCTGTCCAAGAACTACGGCATGTCTGAGTGGCGTGAAGATGTCAAGAAGATTCTGCTCAAGGCTGGCATGCAGAACCTGCCCATCACCTTCCTGTTCTCAGACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:50
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(19.9=81.8)
A:
NA
C2:
PF127802=AAA_8=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCAGGTGATCGAGGAGT
R:
AGTGTCTGAGAACAGGAAGGTGA
Band lengths:
329-800
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]