MmuINT0050535 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32088690-32089501:-
Coord C1 exon
chr14:32089305-32089501
Coord A exon
chr14:32088826-32089304
Coord C2 exon
chr14:32088690-32088825
Length
479 bp
Sequences
Splice sites
5' ss Seq
CATGTAAGG
5' ss Score
6.57
3' ss Seq
ACTCAAACTCCCGCCTCCAGGGC
3' ss Score
7.37
Exon sequences
Seq C1 exon
ATGATGCAGGTGATCGAGGAGTACATGGAGGACTACAACCAGATCAACACAGCCAAGCTGAGGCTGGTCCTCTTCGTGGACGCCATGAGCCATATCTGCCGCATCAGCCGGACGCTGCGCCAGGCTCTGGGCAATGCGCTCCTGTTGGGTGTGGGTGGTAGTGGCCGCAGCTCCCTCACTCGGCTGGCCTCCCACAT
Seq A exon
GTAAGGGATCGTGGTGGGCAGTGGGTGGCATGCGGCCAACTGTTTATAACAGATGCCTTCCACCATGGTAGAATCCTGGTGTTGCCCCAACATAAACCTACTCGGTCCATGAGATTCTAGAAGAGCTGCCGATGGGATCTGGACCTCAAGAAGAGGCAGCAACAGTACCCTGTGGTGCTATGGGTGGGAGGTTAGAGGAAAACATCTAGAAAGATGCCTAGCAGAGAGACCCAGGGGGCCTGCTTTCAGAATCCAATCATGGAGGGCAGGTGGTGGAAGGGACAGGATTCTAGGCCATAGAAATAGTAGCAAGGAAACAAGAGTGTGGGTGCAGGGCCTGGGGGATCTGCAAGTCCTCCCTGGATAGGACCAAACACCAGGTGGCTAGTGGCGGGGGATGGGGGGGTATGAATAGCCATCACCCATCAGCGCTTGGCTCCAGGCCTCTGGCACACCTTGACTCAAACTCCCGCCTCCAG
Seq C2 exon
GGCCGAGTATGAGTGCTTCCAGATTGAGCTGTCCAAGAACTACGGCATGTCTGAGTGGCGTGAAGATGTCAAGAAGGTTCTGCTCAAGGCTGGCCTGCAGAACCTGCCCATCACCTTCCTGTTCTCAGACACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:49
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=PU(19.9=81.8)
A:
NA
C2:
PF127802=AAA_8=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGCAGGTGATCGAGGAGT
R:
AGTGTCTGAGAACAGGAAGGTGA
Band lengths:
329-808
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: