BtaINT0050127 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49056222-49057347:-
Coord C1 exon
chr22:49057176-49057347
Coord A exon
chr22:49056414-49057175
Coord C2 exon
chr22:49056222-49056413
Length
762 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
CTCGATCTCTTTCCCCACAGATT
3' ss Score
11.25
Exon sequences
Seq C1 exon
CCCCATTGGAGAGGTCTTCCGAGCTCGCCTGAGACAGTTCCCCTCCCTGGTCAACTGCTGTACCATTGACTGGTTTAATGAGTGGCCGGCAGAGGCCCTGGAGTCTGTGGCCATCATGTTCCTGAGTGAGATCCCAGAGCTGGATGCCACCCCCAAAGTAATTGAAGGACTG
Seq A exon
GTAGGTATCTTGGTGAGGAGAAAGCTCGTGTGAGGAGAGACTGTGTAGATTTGGGCTTGGGGTCACCAAGGTCTGGGTGAGAGTCCCAGGCGCACCGCTTATGGGAAGTCTCCAGGCAGCCAGCTTTACCTGTCTAAGCCTCAGTTTCCTCATCTGTATAATAGGAATATCACAAGGTGGTCACGGTGATGTAGGAGGCTGGACACACAGTTTCACAGTCACCATTATCCTATTCCCAGAGGGTTCCATAGCAGCATCTCTGAAGAGCCCCCTGATACAACCCAGAGACCACAGATGGGTGGGAGGGCTAGATATGTCTAGCCCAACCTAAGAAAGTGACAGTCACCTGAGGGCCAAGAGCTCAGATGAGCCCATTGCTGTTCAGCCATGCTGAGGCCTTGGGGAGGCCTCCCTTCCCCAGCTACAGCCTCCAAAAGGGGCCCCACGCTGGGGTTTTCTGAGCGAGGCAGGTCATAGGGGCTGTGACAAAGACACTGGGCCAAGAGCTGGGATACCTTTAGGCCCAAATTCAAAGTGAACTCTGCCCTTGACAACTGTGTGAACTTGAAAACGCCTATTGACTTCTCTGAGTCATGGGATTTTTGTCTACAGAGTAGGTGATCTTTAGCTGGAGATCACCTCCTGTGAGAGTGAGTGTGAGGGGCACCTGATTCCCTCCCCAGGCCCAGGCTTCAGTGGCTTCGAGGGCACCCTGGTGCCCCATCTCTACCAGACTGGCATCCTCGATCTCTTTCCCCACAG
Seq C2 exon
ATTCAGGTCTGCGTGTATATCCACCAGTCGGTGGCCAAGAAGTGTGTCGAGTATCTGGCCGAGCTGGCCCGCCACAACTATGTGACTCCCAAGAGCTACCTGGAGCTGCTCAATATCTTCTCCATCCTTGTCGGGCAGAAGAAACAGGAGCTGAAAACCGCTAAGAACCGCATGAAGAGTGGCCTCGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:51
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(21.0=100)
A:
NA
C2:
PF127802=AAA_8=PD(15.9=67.2),PF127772=MT=PU(2.7=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATTGGAGAGGTCTTCCGA
R:
CTTCATGCGGTTCTTAGCGGT
Band lengths:
348-1110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]