DreINT0058001 @ danRer10
Intron Retention
Gene
ENSDARG00000100115 | dnah1
Description
dynein, axonemal, heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-081015-3]
Coordinates
chr11:34402819-34404750:-
Coord C1 exon
chr11:34404579-34404750
Coord A exon
chr11:34403011-34404578
Coord C2 exon
chr11:34402819-34403010
Length
1568 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
3' ss Seq
AATGATTTCTCTCTGTACAGGCG
3' ss Score
8.57
Exon sequences
Seq C1 exon
TCCGGTAGGGGAAGTGTTTCGCGCTCGCCTCAGACAGTTTCCCTCTCTTGTAAACTGCTGCACTATTGACTGGTTCAGTGCTTGGCCACAGGAGGCACTAGAGTCTGTAGCAACATCTTTTCTCAATGAGCTTCCAGAACTGGAGTCCAATCCTAAGACCATCCAGAGCCTG
Seq A exon
GTAAGGACGAGTGTGTCAAATGGATCCCAAAACTCATGATTCAGATCACAGTTTTATGACTTACAGTTGAAGTCAGAGAGTTATTAGCCCTCCTGTATATTTTTTCCCCAATTTCTAATGGAAAGAAGATTTTTTTAGCACATTTTTAAGCATAATAGTTTTAATAACACATTTTTAATAACTGATTTATTTTATCTTTGCCATGAGGACAGTAAATAATATTTTACTAGATACTTTTCAAGATACTAGTAATTCAGATTAAAGTAACACTTAAAGGCTTAATTAGGGTAATTAATTTTATTAGGTAAGTTAGGGTAATTAGGCATGTCATTGTATAACAATGTTTTTTCTCTGTAGACACAGAGAAAAAAATGATCGAAAAAATAGTGCTTAAGGGGGCTAATAATATTATTGACCTTAACATTTAAAAAAAAAAATCAAAACTGCTTTTATTGTAGGCAAACTAAAAAAACAAGACTTTGTCCAGAAAAAGAATTATAGGAAATACTGTAAAAAAATTCCTTGCTCTGTTTAACCTCATTTGGAAAATATTTGAAAAAGGACAGAAAATTCACAGGACGGCTAACAGTTTTGACTTCAGCTGTATTTGGTCAATAAAATGGAACTGAAAACTCATGATTCAGATTACATTTCGTTTCTTTGCAGATCAGATCAGATCTTTTTTTAGATCAGCAAAAAATAAGATAAATATAATTTCCTTTTCTTAATTTATAAAAAAAAAACTACAGAAACTTTGTCAACTTAGAAATCAATGTAAGTTGAATAAATAAATAAGTTACTTGAATGAATTCACATAACTTTTTAAATATATTTTCCTTAAATGAATTAATTTATTTGTATCATAAAGCACATCCTGCACTTTATTGTATCACTCATGCCTTTTCATTAAAAGCTAAACCACAAATGCAAGCACTTTTGAGGACATATTTGAAGGTATATTATGTTTCAGAAGCAAACAACTGGTATCTGGTATTGTATTTTTTGTTTTCTTATACCATTATAACATGTGTACTTTACAGAGCATTAATATGTATGGTAGGCCTACTTTATTTTTATGCTTCAGTCATTGGTTCAATGTTGCTTGAGAGGCCATGTCACAATGCCTGCATGCTGTAAACCTGTCACAGCCAGGCTAGGTTCTTCCCACTCCCATTCACAGAATTCACCCGTTCACTGTCACTCCAATCAGCAAGACCCCCGACTACTAATCACCGATGCACATGCACGCCATTCCCCTTTCATCTTGTTACCTTGTAAACACCTGCATGCTCAATCACAAGGCATTCAAGTTCATCTCCTTCTTCATCAATTAGATTAATATGCCCCTTTCACATAAACATAACATGATTTCTGTAAATTGTATCGCATTTAAAAATGTTAAAAAGTCTTTCAAAGTCTTTCACTCTGGTTGTTAAACAAAAAAATCCACAATAAAAACAGCAGGTCATGTGGATGCCAATCTGTCTGTCATTATCTAAATAGATCAATTTGTTTAACTCCTAGTGTAAATGTATACATGAGCACAAAAATGATTTCTCTCTGTACAG
Seq C2 exon
GCGCTGATGTGTGTTGAAATCCATCAAATGGTGTCCAGGAAGTGTGAGCAATACCTAGCGGAACTTTCCCGCCACAACTCTGTCACACCTAAGAGCTACCTGGAGCTCCTGAGCATATTCTCATCTTTGATTGGCCAGAAGAAGCAGGAGCTTCACAGCGCTCGACAGCGAATGAAAACTGGCCTGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100115:ENSDART00000161471:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.047
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(21.0=100)
A:
NA
C2:
PF127802=AAA_8=PD(16.2=67.7),PF127772=MT=PU(2.3=12.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGTAGGGGAAGTGTTTCG
R:
AGGCCAGTTTTCATTCGCTGT
Band lengths:
357-1925
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]