RnoINT0048607 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7358284-7359279:-
Coord C1 exon
chr16:7359108-7359279
Coord A exon
chr16:7358476-7359107
Coord C2 exon
chr16:7358284-7358475
Length
632 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
CATGATCTCTGCCTTCACAGATT
3' ss Score
9.52
Exon sequences
Seq C1 exon
TCCCATTGGAGAGGTCTTCCGTGCTCGCCTGAGGCAGTTCCCCTCACTTGTCAACTGCTGCACCATTGACTGGTTTAACGAGTGGCCCGCAGAGGCCCTGCAATCTGTGGCCACCAGGTTCCTGCATGAGATCCCAGAACTGGAATGTTCGAGTGAAGTAATTGAAGGACTG
Seq A exon
GTGGGTACCGTGGTGAGATGCAGTCTCTTGGGGGTCAGGGGGGAGAAATGTCTCACTTAATAGAGGCTCGGGGTCACTGAGGCCGACCACGGCCAGCAAAGTGTTGGTGAGATGGTGCTGCCTGGTTACGCCTCAGTTCTACAATGTGTGAAACGAGGCCGTAGGTAACATGGTGACCTGGAGTGTTCTACAGACAGCTAGCACCCCTTAGAGACTACAGATAGGATCAGGCAGATTTGTCAGTTCAGTCTTAGAAAGCTGGCCCTCTGAGGTTCAAGAGCTAAGATGAAGCCAGTGTTTCCCTGTCTTAGACCCAGCCTCTCTGATGGGACACCATCTTAGGCCTTCCAGAGGGAGGCGGCTCATGGGGCTGAGTCAAGGGCCACGGCTGGACGACACCTGGGTCCATCGTCAAGGCCAGGTCTGTTCTTGACTAGTATGGGCCTTGGGCTTTTCATCCACATTAAAGGTTACCTAGGCCCGGAGGTCATGAGGATCTTAGGAAACCATTTATCTGAGGTACAGTTGCGCTGTGACCCTTTCCTCGGGACCAGGGCACAGTGGCCTTGTGGGTACCTGGTACCTGGTCTTTGCTGAAGCACAGCAAGCGTCCATGATCTCTGCCTTCACAG
Seq C2 exon
ATTCACGTTTGCGTGTATATCCACCAGTCCGTGGCCAAGAAATGTGTCGAGTACCTGGCAGAGCTGGCCCGCCACAACTACGTGACCCCCAAGAGCTATTTGGAGCTGCTCAATATTTTCTCCATCCTCATTGGACAGAAGAAAATGGAACTGAAGACGGCCAAACACCGAATGAAGAGTGGCCTTGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:53
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(21.0=100)
A:
NA
C2:
PF127802=AAA_8=PD(15.9=67.2),PF127772=MT=PU(2.2=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGGAGAGGTCTTCCGTGC
R:
GGCCACTCTTCATTCGGTGTT
Band lengths:
353-985
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]