GgaINT0019496 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3083359-3084060:+
Coord C1 exon
chr12:3083359-3083530
Coord A exon
chr12:3083531-3083868
Coord C2 exon
chr12:3083869-3084060
Length
338 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGGT
5' ss Score
8.6
3' ss Seq
TTTTGTTTCCTTTCTTGTAGGTT
3' ss Score
11.95
Exon sequences
Seq C1 exon
CCCTATTGGAGAAGTGTTCCGTGCACGCTTGAGGCAGTTTCCTTCTCTTGTGAACTGCTGTACCATTGACTGGTTTAACGAGTGGCCTGCTGAAGCCCTGCAGTGTGTTGCCTTTTCCTTCTTGCACGAGAACCCACACCTTGGTGCCAGCACCGACACTGTGGATGGGATG
Seq A exon
GTAGGTGCCACACAAAGCACGGCTCTTATGTGATCCCGTGCTTCATCTCCAGCTGCACACAGGCAACAGATGCAGGACACCTGCAGAAAGGTCCCATCCTGGAGCAGTAATGTTTCGTAATCAGTTCATTAAAATCCAGAACCAATTAGATTTTATATGCCTTGAAATACCAAGTTCATCTCTTACCCTCTGTGGCACTGAAGCCCACATGCACATACAAGCTCTGCTGTGAGTGTACACCAAGGCACTTTTAAGCCCCCCCCCTGCTCTCTACACACACTCTCTAGGCTTGTCTACATGCAATACTGAATAAAATTGTTTTGTTTCCTTTCTTGTAG
Seq C2 exon
GTTCAAATGTGTGTAGAAATCCACCAGAGTGTGGCAAGGAAGTGCCAAGTGTACCTGGCTGAGCTGGCCAGACACAATTATGTCACTCCCAAGAGCTACCTCGATTTCCTCAGCATCTTCTGTTCCCTGATTGGAAAAAAGAAACAGGAGCTGAAGACAGCCAAAAACAGGATGGAAGGAGGCCTGGATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:52
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF127802=AAA_8=FE(21.0=100)
A:
NA
C2:
PF127802=AAA_8=PD(15.9=67.2),PF127772=MT=PU(2.3=12.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGAGAAGTGTTCCGTGCAC
R:
AGGCCTCCTTCCATCCTGTTT
Band lengths:
352-690
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]