BtaINT0050141 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047794 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr22:49047489-49048478:-
Coord C1 exon
chr22:49048327-49048478
Coord A exon
chr22:49047686-49048326
Coord C2 exon
chr22:49047489-49047685
Length
641 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGT
5' ss Score
9.73
3' ss Seq
CCTCCTCTGTCCCTTGCTAGAAC
3' ss Score
9.87
Exon sequences
Seq C1 exon
ACAACCTGAAGAAGCGCATTGCCAACATCAACCACTACCTGACCTACAACCTCTACAGCAATGTCTGCCGCAGCCTCTTCGAGAAGCACAAGCTGATGTTCGCCTTCCTGCTGTGTGCCCGCATCATGATGAACCAGGGCAAGATCAACCAG
Seq A exon
GTGCGTGGCAGAGAGGGAGCTACGGCCCGGTCAAGGACGGATGGCCTGAGGGGTTGCCCTGTTGCCGAGCTGACAGAACAGGGTGGAAGGACAGGGCATATCAGGCAGGAGGGCACAGCAAGGGCAGATGGGCAGAGGCCTCCGGAAACAGTTATTTGCGTGAAACCCCAGGAGGCCCGGGTTAACTGTGACCCAGCAGGCCCTGTGCACAGGCCTTCTCAGCACCTTCAGAGTACTAGTGAGCAGAGACCGTCCTGAGCCTCCCAACTCACGGTCTCATGAGTGCCAGGGATTTCGTGGTGTGTTGGGAAGCATTGAGAGTGACCTCCTCCACTGCTTGAGCCCTCACTGTATGCCAGGTGCTGGGCTCACAGCAACCCTCCGACCTACCCCTGTGAAACCCCTGGGAAGCAGAGTCCTGATTCTTCCTACTTTCCAAGTGAGGAAACAGAGGCTCAGAGAGGTCAAATCTTTTGCCTCAGGTCACACAGCCAGGGAAAGGGAAAGAGGTAACACTAACCCAGACCTGTGGGACTACCACCCGAGTTTTCTGGCTGAGGATGGTAGAGGAGGTTCTGCTGGGTGGGGCGCTGGACCCATGGCTCAGGGCCCGGGCGCTCGCCTCCTCTGTCCCTTGCTAG
Seq C2 exon
AACGAGTGGCGCTACCTCCTATCTGGAGGCTCCGTTTCGGTCCTGAGTGAGAACCCTGCCCCAGACTGGCTGACAGACCGGGCCTGGAGAGACATCCAGGCGCTCTCCAACCTACCGGCCTTCTCCTCCTTCACCCATGATTTCGTGAAGCACCTGCCGGAATTCCAGGCCATCTTTGACAGCCATGAGCCCCACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047794:ENSBTAT00000066095:64
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(7.6=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACCTGAAGAAGCGCATTGC
R:
GGGCTCATGGCTGTCAAAGAT
Band lengths:
343-984
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]