GgaINT0019512 @ galGal4
Intron Retention
Gene
ENSGALG00000004297 | DNAH1
Description
dynein, axonemal, heavy chain 1 [Source:HGNC Symbol;Acc:HGNC:2940]
Coordinates
chr12:3096244-3097066:+
Coord C1 exon
chr12:3096244-3096395
Coord A exon
chr12:3096396-3096869
Coord C2 exon
chr12:3096870-3097066
Length
474 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGC
5' ss Score
9.26
3' ss Seq
TTGTACTGTGCTGTTCTCAGGAT
3' ss Score
9.54
Exon sequences
Seq C1 exon
ATACTGTGAAGGACCGGATTGTGAACATCAACAACTACATCACCTTCAGTTTCTACAGCAGCGTGTGCCGCAGCCTCTTTGAGAAGCACAAGCTCATGTTTGCCTTTCTCGTTTGCACCCAGATCTTGATGAATGATGGGCGGATTGATATG
Seq A exon
GTAAGCAAGTCACTCCAGTCCTTGAATAGGATCCCAGCAGAGCAACCCGGGCTCAGGTTTACAGTTCCTTTGCTTAGCTTGCTGGTGTGGAAGAGAAGCCTTGTTCCCTGGGGCTGGGTGCAAATGGGACAGGCTGGTTGGTAAATCTAGGGCCCTTCTGTTCATTCAGATCTCAAACCTTTCCCTGTGCCTATGTGCAGGGCTGCCGAGTCTGAAGCAAAGGGATGGGCTGCTGCAAAGGGCTGGTGAGTTTGGAGGGGTTAGGCAGGGATTAGAGGCTGCAGCACCGCAGAGGAAAGCCAACAGCAATTGAAAGGCAACGTTGATCTCAGCAGACCTTCTGATTCACTTATTCTCCCACATACCCCCCTGGCAGGAGCAGCAGCCAGAAGGTTACTAGCAGATACAGCACAAACCTGCACGCTTCAGGGAAGGTGGGCTGTAACCCATGCCCTTGTACTGTGCTGTTCTCAG
Seq C2 exon
GATGAGTGGCGATACCTGCTCTCAGGGGGAGCTGTAAAGGAGGTGCAGGAGAACCCAGCTCCAGACTGGCTCAATGAGCGAGCATGGGGAGACATCCTGGCTTTGAGCAACCTGAAGAACTTCTCTGGCTTTGCCAATGACTTTGTCGCCAACCTTGCAGCATTCAGGGCCATCTTTGACAGCCACAAACCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004297:ENSGALT00000006843:66
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(33.1=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGAAGGACCGGATTGTG
R:
CTGTGAGGTTTGTGGCTGTCA
Band lengths:
347-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]