MmuINT0050554 @ mm9
Intron Retention
Gene
ENSMUSG00000019027 | Dnahc1
Description
dynein, axonemal, heavy chain 1 [Source:MGI Symbol;Acc:MGI:107721]
Coordinates
chr14:32078449-32079216:-
Coord C1 exon
chr14:32079065-32079216
Coord A exon
chr14:32078646-32079064
Coord C2 exon
chr14:32078449-32078645
Length
419 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
CTCAGTCTGTACTCTACTAGGCT
3' ss Score
4.52
Exon sequences
Seq C1 exon
ACAACCTGAAGAAGCGCATCGTCAACATCAACCGCTACCTGACCTTCAGCCTCTATAGCAACGTCTGCCGCAGCCTCTTTGAGAAGCACAAGCTGATGTTCGCCTTCCTGCTGTGTGTCCGTATTATGATGAATGAGGGCAAGATCAACCAG
Seq A exon
GTGCAGGAACAGGCAGATGGCTCAGGGACTGTTTGTCTGAGGGGGTCACCCTGTCGTGGGCCTGAGGGCAAAGGATAGGTATAAAGGAAAAGCCAAGCAAAAGAGCATAACCCAGTTAAAAGGAACAGAGGTCTTTGGAAACATAATTCTTGCTTAAACACAACAGGGAACTCTAGATTAATATGGGCCAACTGATGCTATGAATGCAAGTCTTCTCAGAGCCTTAAAGGTGCTACTGAGCAGAGAGATTGTCCCCAGGGACAAACTGTCCTGAGCCTCCCATACTTGTCTAGTCGGGAGCATCTGTGACCCTCATATCCAAGAAAGGGCAGAGCAGTGGACACTAAGAGTAATTCAGTTTCTCTGGGTAAGGTGCTGGCTACAAGGAGTGGGCACCAACTCAGTCTGTACTCTACTAG
Seq C2 exon
GCTGAGTGGCGCTATCTCTTGTCTGGAGGCTCCATCCAGACCATGTTTGAGAACCCTGCACCACAGTGGCTATCAGACCGGGCCTGGCGAGACATCTTGGCACTTTCAAACCTGCCAACTTTTGCCACCTTCTCTAATGACTTCGTGATGTACCTCTCAGAATTCCAGGCCATCTTTGACAGTGCTGAGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000019027-Dnahc1:NM_001033668:66
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(7.6=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGAAGCGCATCGTCAA
R:
GTGAGGCTCAGCACTGTCAAA
Band lengths:
343-762
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: