RnoINT0048622 @ rn6
Intron Retention
Gene
ENSRNOG00000026914 | Dnah1
Description
dynein, axonemal, heavy chain 1 [Source:RGD Symbol;Acc:621795]
Coordinates
chr16:7350910-7351683:-
Coord C1 exon
chr16:7351532-7351683
Coord A exon
chr16:7351107-7351531
Coord C2 exon
chr16:7350910-7351106
Length
425 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
CCTAGTCTGTACTCTGCTAGGGT
3' ss Score
3.89
Exon sequences
Seq C1 exon
ACAACCTGAAGAAGCGCATCGTCAACATCAACCGCTACCTAACCTTCAGCCTCTACAGCAATGTCTGCCGCAGCCTCTTTGAGAAGCACAAGCTGATGTTCGCCTTCCTGCTGTGCGTCCGTATTATGATGAATGAGGGCAAGATCAACCAG
Seq A exon
GTGCAGGAGCAGGCAGATGGCTCAGGGACTGTCTGTCTGTCTGTCTGTCTGTCTGAGGGGTCACCATATTGTGGGCCTGAAAGCACGGGATCATGATAAAGGGAAAGCCAAGCAAAAGAGCATAACACAGTTAAAGGGAACAGAGATCTTTGAAAACACAATCCCTTGCTTAAACACAACAGGGGACTCTAGATTAATATGGCCCAACTGAGGCTATGAACACAGGTCTTCCCAGAGCTTAAATGTGCTACTGAGCAGAGAGATTGTCAAACTGTCCTGAGCCTCCCATACCGGTCTACTCAGGAGCTTCTGTGAACCTCATATCCAAGAAAGGGCAGAGTAGTGGACACTAAGAGTACCTCGGTTTCTCTGGGTAAGTTGCTGGCTACAAGGTGTGGGCACTAACCTAGTCTGTACTCTGCTAG
Seq C2 exon
GGTGAGTGGCGCTACCTTTTGTCTGGAGGCTCCATCCAGACCATGTCTGAGAACCCTGCCCCACATTGGCTCTCAGACCGGGCCTGGAGAGACATCTTGGCACTCTCAAACCTGCCAGCCTTTTCTACCTTCTCTACCGACTTCGTGCAGCACCTCCCGAAATTCCAGGCCATCTTTGACAGTGCTGAGCCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026914:ENSRNOT00000035009:67
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0302810=Dynein_heavy=PU(7.6=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAAGAAGCGCATCGTCAA
R:
GTGAGGCTCAGCACTGTCAAA
Band lengths:
343-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]