BtaINT0050168 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54151109-54151916:-
Coord C1 exon
chr17:54151440-54151916
Coord A exon
chr17:54151268-54151439
Coord C2 exon
chr17:54151109-54151267
Length
172 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGTG
5' ss Score
4.58
3' ss Seq
CTTTGAACTTTCTTTTATAGTCC
3' ss Score
8.83
Exon sequences
Seq C1 exon
CATTTTGTTCGCTGGATGAATGGCAGCTGCATAGAATGCCCCCCACAGAAAGGAGAGGAGGAAGAACTTGTTACCATCAGCTTTTACAATGATATCTCTCAGAACCCTCAGATAATTGAGCAGGCTGTTATGATCCCCCAAAACGTCCACAGGATTCTGGTCAGTCTTATGAAGTACCTGCAGAAATGGAAGCGCTACCGACCTCTCTGGAAACTGGACAAAGCCATTGTGATGGAGAAATTTGCTGCTAAGAAGCCTCCCTGTGTTGCCTATGATGAGAAGTTGCAGTTCTATGCCAGGATCGCCTCTGAAGTGATGCACCACCTCTTGATCAAGGATGAGCATTGCATCCGCCTTCAGCTCGGACCCCTGGCTAACACCGTGCAGGAAAACGCCAAGTCCTGGGTGGTTTCGCTCGGGAGACTCCTCAATGACTCAGCCAGAGAGGAACTCAATAACCTGCATGAGGAGATAGAG
Seq A exon
GTAGTGGATCCCAGGTCTTCTCTGAAAGTCCAGAGCACTATGCATTGTGGGACAGAGCCCCAGGGTTTCTCTAAAACTGCTTTTATTTCAAGGAAGTCAGGGCTTCAGGGCACTGTATTCCCCCCCCGCCACCCCATGCTTATTTAGGGCCCCTTTGAACTTTCTTTTATAG
Seq C2 exon
TCCCTGAACAAAAACCTGAAGAAGAGCCCCAGTACCCTCGAGGATCTCAAGTTTGTGCTTGCAACCATCGCAGAAATCCGAAGTAAATCTTTAGTCATGGAACTCAGATACCGGGACGTGCAGGAGAGGTACCGCACCATGGCGATGTACGGGCTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.006 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCTCCCTGTGTTGCCTAT
R:
ACTGGGGCTCTTCTTCAGGTT
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development