HsaINT0049224 @ hg38
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123813164-123813912:+
Coord C1 exon
chr12:123813164-123813640
Coord A exon
chr12:123813641-123813753
Coord C2 exon
chr12:123813754-123813912
Length
113 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTC
5' ss Score
6.43
3' ss Seq
CTTTGTACTTTCTGTTATAGCAC
3' ss Score
9.99
Exon sequences
Seq C1 exon
CATTTTGTTCGTTGGATGAATGGCAGCTGCATAGAATGCCCACCTCAGAAGGGGGAGGAAGAGGAAGTTGTTATAATAAACTTTTACAATGATATCTCTCTGAACCCTCAGATAATTGAACAAGCTGTTATGATCCCCCAAAATGTCCACAGGATTCTGATCAATCTTATGAAGTATCTACAAAAATGGAAGCGGTATCGACCTCTCTGGAAATTGGACAAAGCTATTGTGATGGAGAAATTTGCTGCCAAGAAACCTCCTTGTGTAGCATATGATGAAAAGTTGCAGTTCTATTCCAAGATAGCTTATGAGGTTATGCGCCACCCTCTAATTAAGGATGAGCATTGCATCAGACTTCAGCTCAGGCATCTGGCAAACACAGTGCAGGAAAATGCCAAGTCCTGGGTGATTTCGCTTGGAAAACTTCTCAATGAGTCAGCAAAAGAGGAGCTCTATAATCTCCATGAAGAGATGGAG
Seq A exon
GTACTCAATCGCTGTGTGTAATTGAAACTACTTTTCGTGTAAGTTGGGTCTTCATTTGCGCCATTACTGTTTTTTCTGTGTTTGCTTAGTGTTCTTTGTACTTTCTGTTATAG
Seq C2 exon
CACCTGGCCAAAAACCTTAGGAAGATCCCCAATACCCTTGAAGATCTCAAGTTTGTCCTTGCAACAATTGCAGAAATTAGAAGTAAATCTCTAGTCATGGAACTCAGATATAGGGACGTCCAGGAGCGATACCGTACCATGGCAATGTATAACCTCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653:ENST00000409039:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGTGCAGGAAAATGCCA
R:
ATTGCCATGGTACGGTATCGC
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development