GgaINT0008927 @ galGal3
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
NA
Coordinates
chr15:4938946-4940032:-
Coord C1 exon
chr15:4939556-4940032
Coord A exon
chr15:4939105-4939555
Coord C2 exon
chr15:4938946-4939104
Length
451 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
TTAATTTTTTATTTTTATAGAGA
3' ss Score
7.32
Exon sequences
Seq C1 exon
CATTTTGTGCGGTGGATGCATGGCACGTGTATTGAATGCCCTCCTCAGCGTGTTACAGAAGGTGAAGTTATCACATTCAGCTTTTACAGTGATATCTCCCAGAACCCTCTGATAACTGAGCAGGCTGCTCTCATCACTCAGAATGTCCACAGAGTCCTGACTTCTCTCAGCACGTACTTGAACCACTGGGAGAGATATTGTTTTCTGTGGACAGTGGACAAAGATGTGACCATACAGAAGCTTGCTGCTGAAGAGCCTTCCTATGTCACCTTCGATGAAAAGTTGCAGTTCTATGTGAAGGTAGCTCAAGAAGTCACTCAACAGCCCTTGATAAAAGATGAACAATTTATCAGGCTTTGTCTGAGTTCTTTAGTTCCTGCAGTGGAGGATAAAGCTAAGGATTGGATGATTTCCCTTGGAAAGTTGCTTAATGAGTTTGCAAGAAAGGAACTTTTCAGTCTTCAGGAGGAGATCGAG
Seq A exon
GTAGGTGTTTTCTGTTCTTGTTGTCTGACACAGCTTTCACTGATTTGTAGGTGACCGTATGAACCACTCTGAATTAGTTTGAGTGATGTGCTGTAGCATGCCATACATCCAGAGGTGAGCTGTCACTGCGTAGGTAGGAAACAAAAGAACAGTAATATGCAAAAAAAGAGGCTTTCTCATTCCTGTGTTTGTGAATGGTTCATGTAGGTAATTCTGAAATTCCTTTCAAACCACTCTTCACAACTTCTTTTTTGGTGTAACAAAAACATTTATGTTTTTATGGTATTTACTTCTTGTTGATTTTTAAAAAAAATTTTGTGTTGTGTTTGTCTTTACATAAACTAAAAATGAAAGAGTCAGCATGTCATTTACTTGTGTTTTGTATTTCAGTAAGAATTGGCTAATTACTTTTCCAGTGTTGCCTCTGGAAATTAATTTTTTATTTTTATAG
Seq C2 exon
AGATTGTCTCAGAATCTTAAGACACCTCCTGATTCCTTGGAAGAGCTGAAAATTGTCCTCAGTACAATCACAGCTATCAGAGGCATGTCGTTTATGGTGGAACTGAAATATTTGGACATCTGGGAGAGATACCGAACTCTTGCCATGTATGATATTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACGTACTTGAACCACTGG
R:
TCCAAGGAATCAGGAGGTGTCT
Band lengths:
350-801
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]