MmuINT0050581 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125241258-125242655:+
Coord C1 exon
chr5:125241258-125241734
Coord A exon
chr5:125241735-125242496
Coord C2 exon
chr5:125242497-125242655
Length
762 bp
Sequences
Splice sites
5' ss Seq
GAGGTACCT
5' ss Score
7.63
3' ss Seq
ATTGAGCTGTCTCTCCATAGCAC
3' ss Score
7.16
Exon sequences
Seq C1 exon
CATTTCGTGCGCTGGATGAACGGCAGCTGCATTGAATGCCCCCCGCAGAAGGGGGAGGAGGAAGAAGTTGTCATCATAAGCTTCTACAATGACATCTCCCAGAACACCCAGATCATGGACCAAGCCCTCATGATCCCCCAAAACATCCACAGGCTGCTGGTGAACATCATGAAGTACCTTCAGAGGTGGAAGCGATACCGGCCCCTCTGGAAGCTGGACAAGTCCATCGTGATGGAGAAGTTTGCGGCCAAGAAACCAGCCTGCGTGGCCTACGATGAGAAGCTGCAGTTCTACTCCAAGATTGCCACCGACGTGATGCGCCACCCACTGATCAAGGATGAGCACTGCATCCGGCTGCAGCTCGAGCCCTTGGCCAGCACCGTGCAAGAAAATGCCAAGTCCTGGGTGATCTCGCTGGGGAAGCTCCTCAACGAATCGGCTAGGGAGGAGCTTTATAGCCTCCGGGATGAGATTGAG
Seq A exon
GTACCTAAGGCCACCTTCATTTCAAACAGACGTTCGAGGCCTGGGGGTGCAGCTCTATGGTAGAGGTACATGTGCCTAGCACATGCAAAGGCCCTGGGTTCCATCCTGTCCTTGCTTCGTTTCTGTTGCTATGATAAAATATCCAGACAAAAAGTGACTTAAGGGAGAGAGGGTTTGCTTTATTTCACTCATAACTTAACGTTATAGCCCACCATTGAGAGGGTGTCAAGGTGGGGACTCAGACAGCTAGTGACATACACAGTCAAGAGCAGAGAGAGAGAATCAGTGCATCCTTGCTTGCTTGCTCTCAGCTAGCTTTCTCTTCTCATACTGTTCAGGACCCTCTGCCTAGGGAATGGTGTCACCCACAGCAGGATGGATCTTGCTGCATCATAAACAATTATGACCTCCCCCCCCCAAAAAAAAAAAAAGATGCCTACAGGTCCATCTAGACAATTCCTCATTAAGACTGTCTTCCCAAGTGATTCTGAGTTGCATCAAGTTGACAGTAAAAACCAACCAGCATACCAATGCCTAGCATCCAAACCAGAACAAAGAGCCCTATTCTTGAGGGAGGCGGGCTTGGTTTGTTAGTCTCTTCTCCATGTGAGTGCAGTACTTGCAGAGGCCAGAAGAGGGCATCATATCCCTTGGCATTGGAGTTACAGATGGTTGCAAACAGCCATGTGGGTGCTGAGACTGGAACTCAGGCCTTCTAGAAGAGCAGCCAGTGCTCTTAACCATTGAGCTGTCTCTCCATAG
Seq C2 exon
CACCTGGCCAAGAATCTTAAGAAGAGCCCCAGCACCCTTGAAGACCTCAAGTTTGTCCTCGCAACAATTTCAGAGATCAGGTCCAAATCTTTAGTCATGGAGCTGAGGTACAAGGACATCCAGGAGCGATACCGCACCATGGCGATCTACAAAATCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTACGATGAGAAGCTGCAG
R:
GGTATCGCTCCTGGATGTCCT
Band lengths:
343-1105
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: