BtaINT0050189 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54118189-54119137:-
Coord C1 exon
chr17:54119002-54119137
Coord A exon
chr17:54118312-54119001
Coord C2 exon
chr17:54118189-54118311
Length
690 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GAGTTTGTTCATTTCTCCAGGTT
3' ss Score
8.13
Exon sequences
Seq C1 exon
GTATATTTTATTCGATGGTGATGTGGATGCTTTGTGGGTGGAGAACATGAATTCTGTGATGGATGACAACAAGCTGTTGACCCTGGCCAATGGCGAGCGCATTCGGCTTCAAGCACACTGTGCCCTGCTCTTCGAG
Seq A exon
GCAAGTAGTGATGAAGAATAATTTCAAATAGAAGCCTTTCTTTGAATTACAATTTAAAGTGCTTATTTTTAAAAATTTATTTTATTGAAGTATAGTTGATTTACAATGTTGTACTGATTTCTGCTGTATAGCAGAGTGGTTCAGTTATGCATTTATATGCATTCTTTTTCATATTATCTTGCATTATGGTCTGAATATAGTTCCCCACGCTACACAGTAGGACCTTGCTGCTTATCCATTCTGTATATAATAGTCTGCATCTGCTGACCCCGGCTCTCAGTCCTTCCCTCTCCCTACCCGATCCTCCTTGGCACCCAGAAGCCTATTCTCAGTCTGTTTCTGTTTCATAAATAAATTCACTTGTGTCATATTTTAGACTCCACGTATAACTGATATCATATGGTATTCATCTTTCTCTTTCTGACCTATTTCATTTAGTATGATAATCTTTAGGGCCATCCATGTTGCTGCAGATGGCATTATTTCATTCTTTTTATGGCTGAGTCGTATTCCATTGTATGTATGTACCACATCTTCTTTATCCATTCACCTGTTGATGGAAATTGGCATTGTAAATAGTGTTGCAGTGAACACTGGGGTGCATATATCTTTTTGAATTGTAGTTTTGTCCGGATATATTCCCAGGAGTGGGACTGCTATAGATAACACTGAGTTTGTTCATTTCTCCAG
Seq C2 exon
GTTGGGGATTTACAGTATGCCTCCCCTGCGACTGTGTCTCGATGCGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCAACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.6=100)
A:
NA
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTTTATTCGATGGTGATGTGGAT
R:
TTTCCAGTATGGTTGATATTTCAAGT
Band lengths:
230-920
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development