HsaINT0049246 @ hg19
Intron Retention
Gene
ENSG00000197653 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:2941]
Coordinates
chr12:124349142-124350620:+
Coord C1 exon
chr12:124349142-124349277
Coord A exon
chr12:124349278-124350497
Coord C2 exon
chr12:124350498-124350620
Length
1220 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
GATTTTCTTTATTTATCCAGGTT
3' ss Score
7.42
Exon sequences
Seq C1 exon
GTATATTTTATTTGATGGTGATGTGGATGCTCTATGGGTGGAAAACATGAATTCTGTGATGGATGACAACAGGTTGTTGACATTGGCCAACGGGGAACGCATCCGGCTCCAAGCACACTGTGCCCTGCTCTTTGAG
Seq A exon
GCAAGTAGTGATTAAAAGTAAATTTGAACATAAATCTTTCTTGTAATTAAAAATGCAAATGTTTGTTAAAGTAGTAGTAAATGTAGATGATTATTTAAAAACAAACAATGCATAAGGGTTTATAATGAATACAACTCTTTGTTCTTTACTCCTCTCATCCCTCTTTATCCCAGAAGTGACTACTTTTACTTTTTATGAATTGTTTCTTCTGATGATTACCCTAGTGTCTATAAGTAACAGGCTTAGCATGATATTCTTCCTTTATACATTTTATAGTTTATACATTATCTGTTGACTGACTGCTACAAAAGTGAGAATTCATCTCTTATACCACTAACGTCAGAATAGTATATTGCTAAGTTGGTTAACAGTAGATAATGTTTACATTATAATGAAGATAGAAATAATTTACTGAAGAACCAACTAATATACTACGATTACATTTACTTTCTTTTAGAGCCATTTCCTTTGTCTAGAGTTTGTAATTGCCTTCCTTTTTTTCCCTCACACTATTTGCCTTTATTTTAATCTCATTTTTTTTTTTAAACTTTCTATCATATCAAGTATTCTGTCGAGCCCCTTTATTTCCTGGAGGCTATTCTCCAAAGCCCTCTATCTCTTAGGATATGGACTGCTCGTTTCATAGGTGTGGCCCTGGGACTTGCTTTCACTCTAGCTTAGTATTAATGCCATTTCTAACTGTAAAATTTGTCAGTGCATGAAATATTTGTACATATTATTATCTGATTAGCTGACTGAACTATATTTTTTTTGTAGAGAGAGCTAGGTTTGTTAATATATCTGGTTTAGCTTTGTACTTATGAAGTTTTATACTGCCTGATCTCAACTATGTTAAAAAAATAATAAAGAAAAAAGATTGACTGGAAAACACTCCAAAACAACATTTGTTTCTGGGTGGTGGGATTTGGATAACTTATTTTCTTCTTTATATTTTTCTATTTTTTGTCAGATATTCTACAACGTATTAATTTTCACATTAATTTTATAATAGAAAAACCAAAAAGATGTTACATCAGAAGTGTGTAATCTTCTCATCAAAATCCCAGGTGTTCAGTTAAAAAGCTCATGGAAGCTGTGTTGATTTTGGTATTATTTGGATTTCATGCAGTTGTAAAAACTTTCCATAAGAGAAGGTCCTTAAACATCTAGTTTATCTTGTGTATAGCTATAGCCATGATTGATTTTCTTTATTTATCCAG
Seq C2 exon
GTTGGAGATTTACAGTATGCCTCCCCTGCAACTGTCTCTCGATGTGGAATGGTTTATGTGGATCCTAAAAACTTGAAATATCGACCATACTGGAAAAAATGGGTTAATCAAATACCAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-DNAH10:NM_207437:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.6=100)
A:
NA
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTTATTTGATGGTGATGTGGATGC
R:
TTTTTCCAGTATGGTCGATATTTCAA
Band lengths:
230-1450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)