MmuINT0050603 @ mm9
Intron Retention
Gene
ENSMUSG00000038011 | Dnahc10
Description
dynein, axonemal, heavy chain 10 [Source:MGI Symbol;Acc:MGI:1860299]
Coordinates
chr5:125270132-125272159:+
Coord C1 exon
chr5:125270132-125270267
Coord A exon
chr5:125270268-125272036
Coord C2 exon
chr5:125272037-125272159
Length
1769 bp
Sequences
Splice sites
5' ss Seq
GAGGCAAGT
5' ss Score
3.32
3' ss Seq
AGGGTTTGCTTTCTTCCCAGGTT
3' ss Score
7.44
Exon sequences
Seq C1 exon
GTATATTTTGTTCGATGGTGACGTGGATGCCTTGTGGGTGGAAAACATGAACTCCGTGATGGACGACAACAAACTGTTGACCTTGGCCAACGGGGAGCGCATCCGGCTCCAGGCGCACTGCGCCCTGCTCTTTGAG
Seq A exon
GCAAGTAGCGCCTAGATCCGAACTTGAACACAGGCTTCGCTTTTGGTTAATTAATTCTCTATTGAAGTAGGTGGCTATGGAAATTCAGAGGTTTATAATGAGTTACATTTTCTTCAATACATTTATCTATGCTTTTAAAAATTTTTAACATTGCATTTATCTATGTTTGAGCATGTGCGTGCATACACACACACACACACACACACACACACACACACACACACACTAAAAATACAAGCTTGTGAATTTCATTACTACTGAGTATAATGGCACATGCTTGTAATCCCAGCAATTAGAAGGCTGCTCAGGAGGCAGGAGGATTCCCATGAGTCTGAGACCTATAGCCAGTCCCAAGTTTACAGAAGCAAAGCAAAAGTTAAAAACATCACGTGTTGCTTAATGACCGAGCCCTCTGAATGTGAGGATTTGTTTGGTGCATCAGTCACCAGCCCTCCCTCCTCAGAATATCATATTGCTGAACTGTTTGACAGTACACCCTAGTTACATGGTTTCGAATATGGAAATATTTACTGTAGAGCCAGCTAATATACTGTAGTTCATTCTTTGCCTTTTAGGACCATTTTTTTTTTGGTAGTGGCCTTCCTTTTTCTTATGCTGTTTGCCTTCATCTTCATTAAGAAATTCTTTCTATCATGTCAAGAATTGGGCCCTCCTGTTTTTTCCTTATAGACCACTTTCCAAGTCTTCCCTCTCCCCATTTCCTGATCACCATACCAAGGGCTTGTTCATAGCCGTGCCTTAGGACTCGCTCTTGCCCCATCTTGATAGTGACATCATTTTTTTTTTTCAGTCTGCAGAATTCACTGGTGCATTGTGGTTGTGCAAACTGTGAACCATGGAACCATGTCTTTTATGAAGAGAGACATCTGTCAATGTGCTTAACTTTAGACGTACACTTTGTGATACCCGAACCCTGTCTCAAAAAAATCCCCCAAAACCCCAAAAAGCAAAGAAGAAAACTGTAACATGATGTTTGGGGGTTGCGGCTGGAGGTCGGTTGGTAGAGAGTTTGTTGCATGTAGTTTGTGCTCTACCTGGAAGTCCTGTCCGTACCTTCCTCCTAACGATTGGCCCATAGCTTTCTTTACTGACAGATCAAGAACCAATTGGGGAACAGGACCTTAGCATCAGGCCCACCCCCTACAGAACTCACCTTGCATCACAAGGCCCTGAGTCGATTGCCAACACTGCATAAAGCAGATGTGTTGGCACACCCCTGTCATTCTAGCCCTCAGAAAGCGGAGGCATGAGGACCAGGAGTTCAAGGTTATCCTTAGTTACAGGGTAGCCTGGGCTACATGAAACCTTACCTGAAAAAAACTGAAACAGCCTGGAGGTGGTGGCACATCCCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGTGGGTGTCTGTGAGTTTGAGGCCAGCCTGGTCTATAGAGTAAGTTCCAGGGCATCAAAGGCTACACAAGGAAACAATGTCATAGAAAATAAAAAAGAAAGAAAAGAAAATTCAAACAAACAAACAAACAAAAAACTGAAATAAAACAAAATAAAGTGGCTAGAGAGACGATCCAGTGTTTGGCATGGGTAATCTCATCATGACCGCCATGTTTGTTTAAAAACCTCACATAGGCTATGCCGACTATCTGGTAGGGCTTTGTGTCTTTGGAAATGTGTACACAGGGAAGGCCCTGACATTCGTGGACCATGTGTTAGCAACCACCAGCAGAGGTTTTCCTAGCTGAAGGGTTTGCTTTCTTCCCAG
Seq C2 exon
GTTGGAGACCTGCAATACGCCTCCCCGGCTACTGTGTCTCGATGTGGGATGGTCTATGTGGACCCTAAGAACCTGAAATACCAACCATACTGGAAGAAATGGCTACAACAGATACAAAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038011-Dnahc10:NM_019536:40
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.6=100)
A:
NA
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTTCGATGGTGACGTGGA
R:
CTTGTTTTGTATCTGTTGTAGCCA
Band lengths:
254-2023
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: