DreINT0009121 @ danRer10
Intron Retention
Gene
ENSDARG00000061486 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr5:27743007-27743343:+
Coord C1 exon
chr5:27743007-27743142
Coord A exon
chr5:27743143-27743220
Coord C2 exon
chr5:27743221-27743343
Length
78 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCA
5' ss Score
4.75
3' ss Seq
CATAAGGTCTTGTGTTTTAGGTT
3' ss Score
8.47
Exon sequences
Seq C1 exon
GTACATCCTGTTTGATGGGGATGTGGATGCTCTTTGGGTGGAGAACATGAATTCAGTTATGGATGATAACAAGCTTCTTACACTGGCTAATGGAGAAAGAATTCGTCTCCAGAGTCACTGTGCTCTGCTCTTTGAG
Seq A exon
GTAGCATGTCAACCTTTCAATTATTTTGACTAGAAGTCAGCTGTTGTAGGTTTGCAAACATAAGGTCTTGTGTTTTAG
Seq C2 exon
GTTGGAGATTTGCAATACGCCTCTCCGGCTACTGTCTCTCGCTGTGGAATGGTGTTTGTGGACCCTAAAAACCTTCGCTATGCTCCCTACTGGGAAAAATGGGTCAACAGCAGAGCCCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061486:ENSDART00000135878:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF077289=AAA_5=FE(32.6=100)
A:
NA
C2:
PF077289=AAA_5=PD(10.1=34.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGGGATGTGGATGCTCT
R:
CACCATTCCACAGCGAGAGAC
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]