BtaINT0050192 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016523 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr17:54111037-54115505:-
Coord C1 exon
chr17:54115289-54115505
Coord A exon
chr17:54111157-54115288
Coord C2 exon
chr17:54111037-54111156
Length
4132 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
CTGACCACTTTTTATTACAGGTC
3' ss Score
9.04
Exon sequences
Seq C1 exon
GTAACCCAGTTAGCCAAGATGCTGGATTCGTTACTAGAGGGAGAAATCGAGGAGCCCGATCTTCTGGAGTGCTACTTCTTAGAGGCTCTGTACTGTTCTCTGGGCTCCTGCCTCCTTGAGGATGGAAGGGCTAAATTTGATGAATGTATTAAGCGCATTGCTTCTTTGCCTACTGCTGATACAGAAGGGATATGGGCCAGTCCTGGGGAACTGCCAG
Seq A exon
GTAGGAACCAAACGTAACTTGTTTTTTTTGCTCAGAATGCTTTTGGCTAGGTTTTTAGAGGACATGACCTTGCTTTTCCACATCTGTGCCTGTGTGGGTTTCCTAGATTGTTTGCTTCTGTAGAATAATGTGCAGAGCATCTAGTCGAACCCTCAGGAGAAGTTCAAATGCATAAACTTCAATAGCAGAGGTCTGGGTCTTAGTTGCAGCACATGGGACCTTGAGCTGAAATCTTGAAACTTAGTTGTGGCATGTGGGATCCAGTTCCCTGACCAGGGATTGAACCTGGGCCCCTTGCATTGGGAGTACAGAGCCTTAGCCACTGGACCAGTGGGGAAGTTCTAGTTCCTTTGGGTGGCCTTTGTTGATGAATCTAACCTTTCCCCACCTAGCTTAGGTGCTTGCTTCATTTACTCTGTTTAAGCTCTGTAAAATTTTCATATTGTGCTTGTCTTAATTTCTTCTCCTTTTAGATTCTCTGTTTTTTTTCCTCTAAAATTCCACAGCTAATTCATCTGCTATATTCCTGAGACTTTGCACAGCAGATAATCACATGTGGATCCATAGGTCGTTTGTAGGAAATCATTATATTAAGGTTTAAGTGTTTGCATGAAAAAATGTGCATCCTCAAAGAACCATATATGGTAAAAAGGCTGCATTCTCCAAGAACTATAGATAACACTAGGATCCTTCTTCATCTGTCTCTTAATGACACTTGAATATGATTGGCAGGGAGACCCAGGTTTTATTCTGTAATCATTACCTGGGCTGTTGTTTTTAAAGCTCAAAGTAAAATGATCATAGGTCTTTCTTCTAGAGAGTCATTGAGCAAATAAAAGATGTTTTAAAAGTCTGTGGTCCTTGCTGGGCATACACACCGAGGAAACCAGAATTGAAAGAGACACATGTACCCCAGTGTTCATTGCAGCACTGTTTACAATAGCTAGGACATGGAAGCAACCTAGATGTCCATCGGCAGATGAATGGAAAAGAAAGTTGTGGTATATATACACAGTGGAATATTACTCAGCCATTAAAAAGAATGCGTTTGGATCAGTTCTAATGAGGTGGATGAAACTGGGGCCTATTATACAGAGTGAAGTAAGTCAGAAAGAAAAGCACCAATACAGTATATTAATACATACATATGGAATTTAGAAAGATAGTAATGACAACCCTATACGCGAGACAGCAAAAGAGACCCAGATATAAAGAACAGACTTTTGGGACTCTGTGGGAGAAGGTGAGGGTGGGATGATTTGAGAAAATAGCATTGAAACATGTATATTACCATATGTGAAATAGATGACCAGTCCAAGTTCAATGCATGAAACAGGGCACTCAAAGCCAGTGCACTGGGACAACCCAGAGGGATGGGATGGGGAGGGAGGGGGGAGGTGGGTTCAGGATGGGGGACACATGTACATCTGTGGCTGATTCATGTCAGTGTATGGCCAAAAGCACCACAATGTTGTAAAGTAATTAGCCACCAGTTAAAATAAATTAATGAATTTAAAAAGTCTGTGGTCTTGGGACTTCCCTGGTGGGCCAATGCCTAAGATACCATGCTCCCAACGCAGGGGACCTGGATTCAATCCCTGGTCAGGGAACTAGATCCCATGTACCGCAACTCAGAGTTCGCATGCAGCAACTGAAGATTCTGCATGCTGCTACTAAGACCTGGAGAAGCCAAATAAATACATAAATATATATATATAAAGTCTGGGGTCTTTTGGGGGCTAGTTTTCTTGTACTTTTTCAGAACCCCGAGTCCCCTTTCTGGGGGGAGCTTCCCAGTTGTGCCCACCGTGCTGGCTACCTGCCCCTGCAACCCTCACCCCTCACAGAGACGATGCTGATCCCAGTCTGGTCTTTCTCCCTTAGTTTGCCCTCAGCTTGAGAACTTGAAGACAACCTGTAGGCAACCCACTTCCACATGCCTTCTGCATTCAAGTCCAGCCTCTGGGTCCCTTGACCTCTTCCTAGCCCATTGCACTCAATACTGCTCTGTCTATATCATAGTTACACCTTCCACCCACCACCCATCGTCAGCTTGTGACTCCTGCTGCATGTGTTCTCAGCTGGCCTCATGGGGACTATCCGCTGCCCTTCCCTGTCTTCCTACCACCTTCTGAACCTTCTAAATCCTTTTCTGCTGCCGTGTTGCTTCAGTCTCTCTTGCCTAAGTTTCCTGGCCCTCTTGCCTAGTCTGAGATAACCCAAGCATGCCTTCTCTGCCTCCCCAGGGTTTGAACGGTACTGAGAAAATCACTCTGAAGACTGAAAGTGAAAGTGTTAGTTGCTCAGTTGTGTCTGACTCTTTGTGACCCTATAGACTGTAGCCAGGCTCCTCTGTCCATGGGGTTCTCCAGGCAAGAATCCTGGAGTGGTTTGCCATTCTCTTCTCCAAGGGTTCTTCTCAACCCAGGGATCAAACTCCTGGCACCTCCATAAATTCAGTCTTGAACTCCCTCTCCTATCCCCATGGGGTAATTCATTTCCCTTTTCTCCAAATCTCCACTGGGCCCTCGCCCCCATCTCTGCACATGACCTTCCTCCTTCCTTGAACAGGAAAAACCCACACTGTCAGATAGGAATTTTTCCAGCCCCCATCTTCTCCTGCCTCCTTTCTCAGGGACGGGGAGACCCTCCTCTTGGCCAAGCTGAACCTGCCCTGAGCTTTGAGATCTGCCGCCTCCCACCTCCTCAGGCTCCTGTCTTCACCGGTTTTCTCCTCTGTCTTTTATATTTTCCATCTGTCCATCTCTACCAACCCCATCCCACTGGCTCTTTGACATGTTCTAGTAAAGCCTTCCTAATCCTAGCCCCTTCTAGAGATGTCTCTCTGCCTCTTCCCTTTTAAATTATTTGGCTGCACTGGGTCTTAATTGTAGCAGGATCTTTAGTTACGGTGTGTAGGATCTAGTTCCCCAACCAGGGATTGAACCCAGACCCCCTGCATTGGGAGCTCAGATTCTCAGCCACTGGACCACCAGGGAAGTCCCTGCCTCTTCCCTTTTAAAGCCACATGTCCTGAAAGACTGTCCTTGAGCTACTTTCTCCTTCATCCCACTACTTCTCACCCGTCCGCCTCCCCCCTCCCTTCTGCACATCTCCACCCAAACCGCTCCCAGCCAGCGCCTGCTACTTTCTCCTTCATCCCACCACTTCTCACCCGTCCACCTCCCACCTCCCTTCTGCACATCTCCACCCAAACCGCTCCCAGCTGGCGCCTGCAGTGCCTCCTTGTTGCCGGATCTGAGAGCCTCTTCTGGTCTTTGCCTCCCTGACCTTGCCCCAGTATCAGGCACGGTGCTACTTTCTGCCTTCTTAAAAATTCTTCTTCCATCCTGCTCCATTCTGGCCATGCCTGCGCAGTTTCCTTTGTTGAGTCCCCTACCTTGGCCCCTCCCTCATATCAGGATTTGGTCCTAGACCTTCTTTTCACTCTTTGTGTCCTCACTGAGCCCTTTTCACCCTGCTCACAGCTCTGATTCCCAGGCTCTCCTTTCTAAGCCTTCTGGTTTCCCTAGTTTGGTTATATTTAAATCTATCTTTCCTTTCTTTCTTTCTTCTTTTTTCCATCCATCCATATTTATCTCTCTCTATTTACCTATCCCATTGACACAGGAGTCTGGCAGGTCCATGGGGTCACAAAGAGTTGGAATGACTAACGGTTTGGGCTTCTCTGGTGGCTCAGACTGTAAAGAATCCATCTGCAATGCCGGAGATGTGGGTTCAATCCCTGGGTCAGGAAGGTCCCCTGGAGAACAGTATGGCTACAGACTCCAGAATTTTTGCCAGAAATTTTGTCCTCCATGGACAGAGGAGCCTGGTAGGCTACAGTCCATAGGGTTGCAAAGAATCAGACACGACTGAGTGACTAACACTTTCACTTTTCACCTATCCATCCATCCTTCCATCCATTTGTATCTGTGTATCTATGTCTATTTATATTTATTCATCCATCCATCTTTGTCCATCTCCATCCATCTGTCTGTAGCTGTCAGTTTCTCCAATTAAGTTGCTATCCAGGGAACAAATAGCATTAGTTCGTTCCAAGCATGAGCCAGAGCTGATTCTGTATTTTCATGTCCACAATCAAAACAAAACTGACCACTTTTTATTACAG
Seq C2 exon
GTCAGCTTCCAACCTTGTATGACTTTCACTTTGATTCCACACAGAAGAAATGGATACCGTGGAATCAATTAGTTCCAGAGTATGTTCATTCCCGCGAGAGGAAATTTGTTGACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016523:ENSBTAT00000029664:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(3.4=22.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development