GgaINT0008950 @ galGal4
Intron Retention
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4880706-4881513:-
Coord C1 exon
chr15:4881297-4881513
Coord A exon
chr15:4880826-4881296
Coord C2 exon
chr15:4880706-4880825
Length
471 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
3' ss Seq
AGCTGTTTAATGGTTTGCAGGTC
3' ss Score
6.76
Exon sequences
Seq C1 exon
GTGGTTCAGCTGACTGTGATGCTGGAAGCTCTGCTTGGGGCACAACCTGATGATCCTGATGTTCTAGAGTGCTTTTTCTTGGAAGCCTTATATTTCTCTTTAGGTGCTTCTCTTCTTGATGCTGGAAGAGTTAAATTTGATAAATACATTAAACATGTTTCCTGTATGTCAACTGTTCATGATGAGAACATCCTGGCTAAGCCAGGGGAGCTGCCAG
Seq A exon
GTAGGATTTTATCATAACATACTCCAAATCCCATGGTTATGTTGGAAAAGTCTTGGTTTCCTTGAAGTGAGAACATTGTTCTTCCTTCCAGCTATCTGTCCTGATTGCAGAAAAAATGTTTGATGTTCTCTGAAGGACTGTCACTAAAACATGTGTAGAGGTACTGTTGCTAGCTGACCCTTAGCTACTGGCTTACCTTCACAGAACAGTACTTTTCTGTGTCAGCCAGAAAATGTAAACAGTGAAAGGAAAAACAAGAAGGGAAATGCAAACCATTAGAAAAGTGCTTATTAATTGATAATATGACCCAAGTACTGGATTAGGAGAACTTTGTTAGATGTCTTTCTGGGTTAAATGACAAGTGGAACAATGTTGCTCTACTTGGTCCAGAATCACATCCTTTACTTTTATTTCAGTCTTATGAAACGGTAAAGTGTCATAGGAACCTTTCAGCTGTTTAATGGTTTGCAG
Seq C2 exon
GTCAGCTGCCAACTTTGTATGACTTTCATTTTGATGGATTTCAAAAAAAGTGGGTACCTTGGATGAAACTTGTTCCTGAATATATTCATAATCCTCAAAAGAAGTTTCTTGACATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170:ENSGALT00000005023:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF127752=AAA_7=PU(4.8=31.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCAGCTGACTGTGATGC
R:
AGGATGTCAAGAAACTTCTTTTGAGG
Band lengths:
334-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]