GgaEX0004147 @ galGal4
Exon Skipping
Gene
ENSGALG00000003170 | DNAH10
Description
dynein, axonemal, heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr15:4880706-4881952:-
Coord C1 exon
chr15:4881818-4881952
Coord A exon
chr15:4881297-4881513
Coord C2 exon
chr15:4880706-4880825
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTTGACTTTTTTTACGACAGGTG
3' ss Score
8.96
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
CAAGAGAGAATTGAATTGAATCGTTTATTCGAAAAATATGTGCCCTGCCTTATTGATATGATTACAGAGGGAATTGTGGATGGCAAACAAGAAGAAAGGCTGAAGACCATTGTTCCTCAAACAGATTTAAATATG
Seq A exon
GTGGTTCAGCTGACTGTGATGCTGGAAGCTCTGCTTGGGGCACAACCTGATGATCCTGATGTTCTAGAGTGCTTTTTCTTGGAAGCCTTATATTTCTCTTTAGGTGCTTCTCTTCTTGATGCTGGAAGAGTTAAATTTGATAAATACATTAAACATGTTTCCTGTATGTCAACTGTTCATGATGAGAACATCCTGGCTAAGCCAGGGGAGCTGCCAG
Seq C2 exon
GTCAGCTGCCAACTTTGTATGACTTTCATTTTGATGGATTTCAAAAAAAGTGGGTACCTTGGATGAAACTTGTTCCTGAATATATTCATAATCCTCAAAAGAAGTTTCTTGACATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003170-'46-54,'46-53,47-54
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(4.8=31.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGAGAATTGAATTGAATCGTTT
R:
GGATGTCAAGAAACTTCTTTTGAGGA
Band lengths:
252-469
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]