HsaEX6069947 @ hg38
Exon Skipping
Gene
ENSG00000197653 | DNAH10
Description
dynein axonemal heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:2941]
Coordinates
chr12:123867467-123870485:+
Coord C1 exon
chr12:123867467-123867601
Coord A exon
chr12:123867903-123868119
Coord C2 exon
chr12:123870366-123870485
Length
217 bp
Sequences
Splice sites
3' ss Seq
GATATTTTCCTGTGAACCAGGTA
3' ss Score
6.14
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
Exon sequences
Seq C1 exon
GTGGAGCAATACAATTTGAATAGTCTCTTTGAGAAGTATGTGCCCTATCTCATGGATGTGATAGTGGAAGGAATTGTGGATGGAAGACAAGCAGAAAAGCTGAAGACAATAGTTCCTCAGACAGACCTCAATATG
Seq A exon
GTAACCCAGTTAGCCAAGATGTTGGATGCGTTGCTAGAAGGAGAAATAGAAGACCTTGACCTGCTGGAGTGCTACTTCCTGGAGGCTTTGTACTGCTCTCTGGGAGCCTCCCTGCTTGAGGATGGAAGGATGAAATTTGACGAATATATCAAACGCCTTGCTTCTTTGTCTACTGTTGACACAGAAGGAGTTTGGGCCAACCCTGGGGAACTGCCAG
Seq C2 exon
GTCAACTTCCAACCTTGTATGACTTTCATTTTGATAACAAACGGAATCAATGGGTCCCATGGAGTAAATTAGTTCCAGAGTATATTCATGCCCCCGAGAGGAAATTCATCAACATCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197653-'57-56,'57-55,58-56=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF127752=AAA_7=PU(4.8=31.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGCAATACAATTTGAATAGTCT
R:
AGGATGTTGATGAATTTCCTCTCGG
Band lengths:
253-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains